Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64040 170 / 1e-54 PSAN, PSI-N photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002084 [exp] 224 / 5e-76 AT5G64040 216 / 8e-73 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063300 [exp] 167 / 1e-53 AT5G64040 224 / 5e-76 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2) Potri.007G105900 [exp] 165 / 1e-52 AT5G64040 231 / 1e-78 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05479 [flax] [poplar] PsaN Photosystem I reaction centre subunit N (PSAN or PSI-N)
Representative CDS sequence Show only first row Show all	>Lus10003849 pacid=23163343 polypeptide=Lus10003849 locus=Lus10003849.g ID=Lus10003849.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCAGCATGATGATGAGCTCCTCTTCCAGTGTCCTTGCCTGCAAGTACACTACCAAATCTTCATCATCAACCACCAGGAAGTTCCCAGTGA TCAGAGCTCAGCAAGGAGATCGTGAAGCTGGAAATGGGAAAAAGGCTGCAGTGGCTTTCCTTGCAGCTACACTGTTTGCCACTGCAACTGTTTCTACTTC CTTCTCGGCCAACGCTGGTGTCATTGATGACTACCTTGAGAAGAGCAAAGTCAACAAGGAATTGAATGACCAGAAGAGGCTGGCAACAAGTGGAGCAAAC TTTGCAAGAGCATACACTGTCCAGTTTGGCTCCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTTGCCAAGCAAAAGAAAGTTCCATTCATCT CTGAGGATTTGGAGTTGGAGTGCAAAGGAAAAGACAAGTACAAGTGTGGCTCTAATGGTTTCTTGGAATGGTGA
AA sequence Show only first row Show all	>Lus10003849 pacid=23163343 polypeptide=Lus10003849 locus=Lus10003849.g ID=Lus10003849.BGIv1.0 annot-version=v1.0 MAATSMMMSSSSSVLACKYTTKSSSSTTRKFPVIRAQQGDREAGNGKKAAVAFLAATLFATATVSTSFSANAGVIDDYLEKSKVNKELNDQKRLATSGAN FARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISEDLELECKGKDKYKCGSNGFLEW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	0	1
AT1G67700			unknown protein		Lus10006442 [exp]	2.4	0.9702
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	2.6	0.9793
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	3.5	0.9518
AT1G51400			Photosystem II 5 kD protein (....		Lus10009950 [exp]	6.3	0.9568
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	7.1	0.9659
AT2G38570			unknown protein		Lus10014180 [exp]	7.7	0.9280
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	8.9	0.9600
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	8.9	0.9388
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	9.2	0.9592
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	10.3	0.9130

Compare expression of checked genes

Lus10003849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.