Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16550 123 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002085 [exp] 270 / 2e-91 AT5G16550 202 / 2e-64 unknown protein Lus10033497 [exp] 170 / 7e-53 AT5G16550 204 / 2e-66 unknown protein Lus10020879 [exp] 67 / 2e-12 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082300 [exp] 154 / 7e-47 AT5G16550 185 / 1e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003850 pacid=23163349 polypeptide=Lus10003850 locus=Lus10003850.g ID=Lus10003850.BGIv1.0 annot-version=v1.0 ATGGACGAATCGGAGGAAACCTCCGTCATCAACGGCACCCACGCCGACGATAAGCCTAGCTCTCACCGGAAAAGAACCATCGAAGACGAAAACGACGAAG ACTTGACTCTCTACGGCGTCTTGCATCGCTTTCTGACCACGATCTTCGCTCCTGCATCCTCGGGTAGCGCATCCGCTCCGCTACTACATCGTATCAAGGC TTCTTTCTCCGACAACGGACCGTTCCTCAAGGATGCTACCGAGAACACTGGACGGGAGGTTCTTGCCTGGACAAGGAACGGCAGCCCTCTCCGCGCCCTG CTCGTCATCTCAGTCGGGACTGTGGCTCTTCTTGCCATGACAGGAACATTAGTGTTCATGCTTTTCTTCGTGGCAGCCACCATCAACGCTATTGTCATCT CCCTTCTCGTGTCACTGGCTGCTGCCGGTGGCTTCCTGGCTCTTTTCTTCGCCTGCCTTGCTACCATATACATCGGGGCACTATCGGTCGCAATATTTGC CATTTCAACAGCAACAATCTCGACAATTATCGCTGTCGTCGTGGCTACAGGTTGGATCGGATTCTTCTGGACAATATGGTTGGTGACAAGGAAGAGTGTC GGCCTCGCGACACATTCGCTGAGTGTGACCGGATCGGCCATTTCGTCGTACTCGTCAGCTTGGCATAGTCGCCAACGAGTACCGGAGAAAGAAGAATGA
AA sequence Show only first row Show all	>Lus10003850 pacid=23163349 polypeptide=Lus10003850 locus=Lus10003850.g ID=Lus10003850.BGIv1.0 annot-version=v1.0 MDESEETSVINGTHADDKPSSHRKRTIEDENDEDLTLYGVLHRFLTTIFAPASSGSASAPLLHRIKASFSDNGPFLKDATENTGREVLAWTRNGSPLRAL LVISVGTVALLAMTGTLVFMLFFVAATINAIVISLLVSLAAAGGFLALFFACLATIYIGALSVAIFAISTATISTIIAVVVATGWIGFFWTIWLVTRKSV GLATHSLSVTGSAISSYSSAWHSRQRVPEKEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16550			unknown protein		Lus10003850 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	2.2	0.8560
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	2.8	0.8537
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Lus10002674 [exp]	5.7	0.8146
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	5.7	0.7890
AT1G29530			unknown protein		Lus10025373 [exp]	10.4	0.8108
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	11.5	0.7548
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	12.0	0.7850
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	13.6	0.8114
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	17.1	0.8130
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	17.4	0.7726

Compare expression of checked genes

Lus10003850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.