Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33480 280 / 4e-92 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002086 [exp] 570 / 0 AT4G33480 285 / 1e-93 unknown protein Lus10020876 [exp] 276 / 1e-90 AT4G33480 308 / 6e-104 unknown protein Lus10033501 [exp] 271 / 9e-89 AT4G33480 308 / 5e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099900 [exp] 304 / 2e-101 AT4G33480 340 / 3e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12527 [flax] [poplar] DUF3727 Protein of unknown function (DUF3727)
Representative CDS sequence Show only first row Show all	>Lus10003851 pacid=23163355 polypeptide=Lus10003851 locus=Lus10003851.g ID=Lus10003851.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCTTCGTCAATCTCCTTCTCCACTGTAATCTACCGACTATTCCATCATCACCACCAAAACAAAAGCAACCTTCTTCTCTCATTTCCCGCCT CCAAATTCTCCATCCCCAACCTACCTTGCCTCTCCATTACCCGAGCTTCCTCCTCATCCTCATCCTCCTCGTCTTCCGCGAAGAAGAAGAACAAAAACAA GACGCTCACCTCGAAGAAGAAGAATAATAGCAAGAAAGGTAAGGCCGGTGACGACTGGAAGGATCTCAGTTCGCTTAGCGATTTTGAAATCGTTGGTAAA GCTCCCAAAGCAGTTAAAAAAATTGATGATGATTATGACGAAGTCAGCCTCCGTGGTTCCTCAACTTACCTTCCTCCATCGACGACTTCTCCATTGCCGA AGCCCCCCGCCGGCTTTACCGTATCCGAATCGGGAAGAATCTCCGTCACTTCCGTCAGCCGGATTGCCACAATTGTTGATGCTACGAATAACAGTCCGTT GGAGTGTGTAGTAAGGAGAGTGTTTAAGAGTTCAAGAGGCGATGAATGTATGCTCTTGTGCCCCGTCGATATGCCTGTTCACTTACTGAAGAGTATGAAC ATCGATGGGTGGTCAGCGATCAGTGATGAAGAAGTGGAGGTTATCCTTCCGGATGCTGCATTTGCTTTGTCGAAGATAGACATGCATCTTGTCCTTAGCG GATTCTGTCTCACGGCTAGAGGCGCATTCTGTTACCAGGATGACGACATATTCGATTTCCGCACAGGCAAGGACCCATCTCACCTTCTCCTAGTGAGAAA CATAGCTGAGCAGGACTTGAAGACGAAACATTCTACTGATGAAGCTTTTGCTAATGTTGCAGGCGATGGCGAAAATACAGATGGAGTACCCTGTGAGGGT GTTGAAGTCACAGACTTCCATATTGATGGTACACATTACATGATGTATACCCCATCAGATCCACTTCTTTTCATCGCCATTCGGGATCAGGATGGAGTGT TGCAAATCGCTGACGATGATCTACTGGAGGATCCGGCCGTCATCACTGCCATCGACGAAGAGACTGAATTCAATGCGTATGCACTAGTGGAGGAAGAAGC TTCTCTTAATGGATCTGGGATGGGCAAGGGCTGA
AA sequence Show only first row Show all	>Lus10003851 pacid=23163355 polypeptide=Lus10003851 locus=Lus10003851.g ID=Lus10003851.BGIv1.0 annot-version=v1.0 MAVPSSISFSTVIYRLFHHHHQNKSNLLLSFPASKFSIPNLPCLSITRASSSSSSSSSSAKKKNKNKTLTSKKKNNSKKGKAGDDWKDLSSLSDFEIVGK APKAVKKIDDDYDEVSLRGSSTYLPPSTTSPLPKPPAGFTVSESGRISVTSVSRIATIVDATNNSPLECVVRRVFKSSRGDECMLLCPVDMPVHLLKSMN IDGWSAISDEEVEVILPDAAFALSKIDMHLVLSGFCLTARGAFCYQDDDIFDFRTGKDPSHLLLVRNIAEQDLKTKHSTDEAFANVAGDGENTDGVPCEG VEVTDFHIDGTHYMMYTPSDPLLFIAIRDQDGVLQIADDDLLEDPAVITAIDEETEFNAYALVEEEASLNGSGMGKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33480			unknown protein		Lus10003851 [exp]	0	1
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	1.0	0.8690
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	2.0	0.8215
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	2.8	0.7998
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	3.0	0.7868
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	3.7	0.7936
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	3.9	0.8070
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	7.1	0.7993
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	7.7	0.7978
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	8.4	0.7863
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	10.6	0.7915

Compare expression of checked genes

Lus10003851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.