Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002087 [exp] 107 / 4e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003852 pacid=23163340 polypeptide=Lus10003852 locus=Lus10003852.g ID=Lus10003852.BGIv1.0 annot-version=v1.0 ATGGGGGGTTGCGCCACCAAGCCAAAGGTCGCCAAAGACCAGAATCTCCCGGCGCCGGCGCCTGAGAAGGGGGATGAGCTAGCCACGTCCACCGCTGTGG ATACGACGGAAGTGGAGGAGAAGGAGGTTGTGGTCGTCGGAGGTGAAGAAGGAGAGAAGAAGAAAGGTGACGGCGAGACCCTCAGTCAACAGCTGTTGAA GGAGAGCACGGAAGAAGAAACAGAGACCATCGTAGAAAACGGTAACAAGTCATCGTTGCCGGAAGCGGCAGTGGAAGTGACGATGATGGAGGCCGGGAAA GGTGATGCTCCGGAGGCGGCGGCGGCAGAAGTGGTGAAGGAGGCCGTTGCTGTAAGTTGA
AA sequence Show only first row Show all	>Lus10003852 pacid=23163340 polypeptide=Lus10003852 locus=Lus10003852.g ID=Lus10003852.BGIv1.0 annot-version=v1.0 MGGCATKPKVAKDQNLPAPAPEKGDELATSTAVDTTEVEEKEVVVVGGEEGEKKKGDGETLSQQLLKESTEEETETIVENGNKSSLPEAAVEVTMMEAGK GDAPEAAAAEVVKEAVAVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003852 [exp]	0	1
					Lus10002087 [exp]	3.2	0.9330
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	4.7	0.9214
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	6.9	0.9011
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	8.1	0.8531
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	8.2	0.8530
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	8.7	0.9185
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	9.9	0.9194
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	10.6	0.8931
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	10.6	0.8940
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10006542 [exp]	13.0	0.8569

Compare expression of checked genes

Lus10003852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.