Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09850 221 / 1e-69 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 74 / 3e-14 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT5G05140 64 / 3e-11 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002088 [exp] 562 / 0 AT5G09850 276 / 9e-91 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 69 / 8e-13 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10039000 [exp] 67 / 7e-12 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003900 [exp] 279 / 4e-92 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.001G307600 [exp] 271 / 5e-89 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.016G033300 [exp] 52 / 3e-07 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 52 / 4e-07 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10003853 pacid=23163332 polypeptide=Lus10003853 locus=Lus10003853.g ID=Lus10003853.BGIv1.0 annot-version=v1.0 ATGGATTCGGACGATCTCCGATCGATCCTGGAAACGGCGGGAGTGGACGTTTGGGAGCTAATAGACTCGGCCATCGCCGTCGCGTCGTCGGATTACCCGT CGGAGCTGAAGCAAAGGAGGGATAAAATCGTGGAAGCATTGTTCTCCTCCGCCGCCTACGCCACATGTAACAGATGTGCTCAGAGTGGTGGCGGGAATGG ACGGGAGATGGAAGTGGACACAAATACTTCTCCGGCCGCAGTCGCCGCCGTCGTCGAGAGAGAAGCAATTAGGCGGCGTTCTCCTGTAACGCCCGTAGAT GATGAGTTTGAAGAAGAAGATCCGTACGCTGGATTATTCGAAGATGATATAGAGACTAGAGTTATGGATATTAAACAGCAGCTGGAAGATCCTGATCAGT CTGAAGATTCTCTGGTTGAGTTGCTGCAAACTCTGGATGACATGGATATAACATTCAAGGCTCTAAAGGAGAGTGACATTGGAAGGCATGTGAACAGGTT AAGGAAGAATCCATCAAATGAAGTCAAGAGATTAGTGAAGAAGCTAGTCAGGAAATGGAAGGAGATTGTTGATGAATGGGTGAGGTTGAATCCACAGGGA GGAGAACATGGTTCCTCAGCTCTGATGGCTGATGGGGACTCACCTCAGCAACAAAGGATTACCCAGAATGGAAACTATCATCACCAGGTGCCTGATTTCG CATACTCTCCCAACCCCAACAATGGTAGTTCCGGATCGGACAGAAATTACTCCGAACCGGAAATGGTAGCTCGAAAGCCAAAGCCTCCGGTTTCCGGTAC TGTTAGAAGAGAAGCTCCAACAAGACCAGCTCAACAATACTCATCATCGACTGCTCCTCCCAATAGGTCACAGCAACAAAAAGGGAGCAATGGCAACTTC AACTCAGAAAGGCTGGCCTCAGCAAGCAAAAGACTTCAAGAGAGCTACAAAGAAGTTGAAAATGGTTTGTTCTTCTCCCTTTCTCATCATCCTGGTTTTC GGTATTATTGTAAACCTGATTAA
AA sequence Show only first row Show all	>Lus10003853 pacid=23163332 polypeptide=Lus10003853 locus=Lus10003853.g ID=Lus10003853.BGIv1.0 annot-version=v1.0 MDSDDLRSILETAGVDVWELIDSAIAVASSDYPSELKQRRDKIVEALFSSAAYATCNRCAQSGGGNGREMEVDTNTSPAAVAAVVEREAIRRRSPVTPVD DEFEEEDPYAGLFEDDIETRVMDIKQQLEDPDQSEDSLVELLQTLDDMDITFKALKESDIGRHVNRLRKNPSNEVKRLVKKLVRKWKEIVDEWVRLNPQG GEHGSSALMADGDSPQQQRITQNGNYHHQVPDFAYSPNPNNGSSGSDRNYSEPEMVARKPKPPVSGTVRREAPTRPAQQYSSSTAPPNRSQQQKGSNGNF NSERLASASKRLQESYKEVENGLFFSLSHHPGFRYYCKPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	0	1
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	1.0	0.9878
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	1.4	0.9515
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	2.4	0.9480
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	6.5	0.9091
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	8.1	0.9309
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	8.5	0.9243
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	10.0	0.9346
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	10.2	0.9298
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	12.0	0.9338
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	12.5	0.9098

Compare expression of checked genes

Lus10003853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.