Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39330 468 / 7e-167 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 436 / 2e-154 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 436 / 3e-154 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37990 358 / 1e-123 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37970 353 / 8e-122 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37980 345 / 1e-118 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT3G19450 281 / 4e-93 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 258 / 2e-84 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT1G72680 256 / 1e-83 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G63620 86 / 8e-19 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002089 [exp] 555 / 0 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10000143 [exp] 417 / 1e-147 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 394 / 7e-138 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 390 / 2e-136 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 369 / 5e-128 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10005611 [exp] 342 / 2e-117 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 333 / 7e-114 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10027864 [exp] 303 / 5e-102 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 301 / 3e-101 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307200 [exp] 489 / 4e-175 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.006G199100 [exp] 398 / 2e-139 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G065300 [exp] 398 / 2e-139 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.016G078300 [exp] 397 / 5e-139 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G268600 [exp] 396 / 1e-138 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 391 / 3e-136 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 333 / 9e-114 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 332 / 6e-113 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.003G196700 [exp] 267 / 4e-88 AT1G72680 469 / 1e-166 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148100 [exp] 266 / 1e-87 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003854 pacid=23163338 polypeptide=Lus10003854 locus=Lus10003854.g ID=Lus10003854.BGIv1.0 annot-version=v1.0 ATGGCGAATAAATCCCCGGAGACAGAGCACCCTCAGAAGGCCTTCGGATGGGCTGCCAGAGATAACTCCGGCGTCCTTTCTCCCTTCAATTTCTCCCGCA GGGAGAATGGAGATGAAGACGTGACCATAAAGATCCATTTCTGTGGGATTTGCCACTCAGACTTGCACTCCCTCAAGAACGAGTGGGGCTTTTCTCGTTA CCCTATGGTTCCAGGGCACGAGATCGTTGGCATTGTGACGAAATTGGGCTCGAACGTGTCGAAGTTCAAGGAAGGGGACCGAGTTGGGGTGGGAGTGATG GTTGGTTCATGCAAGTCGTGTGACTACTGTAACCAGGACTTAGAGAACTACTGCCCGCAGATGGTGTTCACTTACAATGCAACCTACATTGACGGGACCA GAACCTACGGTGGCTACTCGGACATGATTGTTGTGGACCAGCGGTTCGTGGTTAGATTCCCCGAAAGCATGCCGTTCGATGCTGGTGCGCCTTTGCTTTG TGCTGGTGTGACGGTGTATAGCCCCATGAAGTACTATGGAATGACCGAGGCTGGGAAGCACTTAGGGATTGTTGGGCTTGGTGGACTCGGACATGTTGCT CTTAAGATCGGTAAGGCGTTTGGTTTGAAGGTTACTGTCATTAGTAGGTCAGCTGATAAGGAGATTGAAGCTGTTGAGAGATTGGGTGCTGATGCTTTCC TTGTCAGCAGTGATCCTCTCAAGATCAAGGCTGGGTTTGGTACAATGGATTATATAATAGATACAGTTTCAGCAGTTCACTCATTGGCACCATTGTTGGC ACTTCTGAAGCCAAATGGGAAGCTGATCACTTTAGGCTTGCCTGATAAGCCACTTGAGCTTCCAATCTTCCCTTTGGTTCTGGGTCGAAAGCTGGTGGGA GGGAGCGACATAGGAGGGAGGAAGTAG
AA sequence Show only first row Show all	>Lus10003854 pacid=23163338 polypeptide=Lus10003854 locus=Lus10003854.g ID=Lus10003854.BGIv1.0 annot-version=v1.0 MANKSPETEHPQKAFGWAARDNSGVLSPFNFSRRENGDEDVTIKIHFCGICHSDLHSLKNEWGFSRYPMVPGHEIVGIVTKLGSNVSKFKEGDRVGVGVM VGSCKSCDYCNQDLENYCPQMVFTYNATYIDGTRTYGGYSDMIVVDQRFVVRFPESMPFDAGAPLLCAGVTVYSPMKYYGMTEAGKHLGIVGLGGLGHVA LKIGKAFGLKVTVISRSADKEIEAVERLGADAFLVSSDPLKIKAGFGTMDYIIDTVSAVHSLAPLLALLKPNGKLITLGLPDKPLELPIFPLVLGRKLVG GSDIGGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10003854 [exp]	0	1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	1.0	0.9530
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	1.7	0.8961
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	2.0	0.9066
AT5G01790			unknown protein		Lus10030550 [exp]	3.9	0.8586
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	10.7	0.8384
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	11.0	0.8095
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	16.1	0.8647
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	16.9	0.7782
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	19.4	0.7959
					Lus10021443 [exp]	20.4	0.7699

Compare expression of checked genes

Lus10003854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.