Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64730 498 / 7e-180 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 133 / 9e-37 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 131 / 9e-36 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 120 / 7e-31 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 105 / 4e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 99 / 4e-23 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 99 / 5e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 93 / 5e-21 transducin family protein / WD-40 repeat family protein (.1) AT5G08560 92 / 1e-20 transducin family protein / WD-40 repeat family protein (.1.2) AT5G25150 87 / 7e-19 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002090 [exp] 582 / 0 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 137 / 4e-38 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 132 / 2e-36 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 127 / 2e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 126 / 6e-34 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 104 / 8e-25 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 101 / 2e-24 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 102 / 4e-24 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 99 / 2e-23 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306500 [exp] 545 / 0 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 145 / 2e-41 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 132 / 2e-36 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 127 / 1e-34 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 108 / 3e-27 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 110 / 6e-27 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 97 / 2e-22 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G206600 [exp] 92 / 9e-21 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 92 / 2e-20 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 87 / 6e-19 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003855 pacid=23163337 polypeptide=Lus10003855 locus=Lus10003855.g ID=Lus10003855.BGIv1.0 annot-version=v1.0 ATGAGCGTCTCCGATTTGCCGACGAAGGAGGCCAACGTGCTGAAAGGCCATGAAGGAGCCGTACTAGCCGCGAGGTTCAACGCCGATGGAAACTACTGCC TCAGCTGCGGCAAGGACCGTACGATCCGTCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAGTCCCACGGCCGTGAAGTCCGCGACGTCCA CGTCACCCCAGACAATTCCAAGTTGGTGTCTTGTGGCGGGGATCGGCAGGTGTTCTATTGGGATGTTTCCACTGGACGAGTGATCAGGAAGTTCCGCGGA CACGACAGCGAGGTGAATGCTGTGAAGTTCAATGAGTATTCATCTCTGGTGGTATCGGCTGGCTATGATCAATCTGTGCGTACTTGGGATTGCCGGTCTC ACAGTACTGAGCCTATCCAGATCATTGATACGTTTACAGATAGTGTGATGTCTGTTTGTTTGACGAAAACGGAGATCATTGCTGGGAGTGTAGATGGCAC AGTTAGGACATTCGACATTCGAGTTGGTAGAGAAATCTCCGACAATTTAGGCCAACCTGTTAACTGTATATCTATGTCGAACGATGGCAACTGCGTATTA GCTAGTTGTTTGGATTCCACCTTACGCCTTCTGGATAGAACCACTGGTGAGCTCTTGCAAGAATATAAAGGGCATACTTGTAGGTCTTTCAAAATGGACT GCTGCCTCACAAATTCAGATGCCCACATTACTGGTGGATCTGAGGACGGGTATATCTACTTCTGGGATCTTGTTGATGCGTCTGTGGTTTCGAGATTCAG AGCTCATGCATCAGTGGTCACGAGTGTGAGCTACCATCCAAAGGACAACTGCATGGTGACTGCATCTGTGGACAACACCATTAGAGTTTGGAAGACCTAA
AA sequence Show only first row Show all	>Lus10003855 pacid=23163337 polypeptide=Lus10003855 locus=Lus10003855.g ID=Lus10003855.BGIv1.0 annot-version=v1.0 MSVSDLPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLVSCGGDRQVFYWDVSTGRVIRKFRG HDSEVNAVKFNEYSSLVVSAGYDQSVRTWDCRSHSTEPIQIIDTFTDSVMSVCLTKTEIIAGSVDGTVRTFDIRVGREISDNLGQPVNCISMSNDGNCVL ASCLDSTLRLLDRTTGELLQEYKGHTCRSFKMDCCLTNSDAHITGGSEDGYIYFWDLVDASVVSRFRAHASVVTSVSYHPKDNCMVTASVDNTIRVWKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	0	1
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	1.0	0.8680
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	3.0	0.8564
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	3.5	0.8527
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	4.6	0.8360
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	5.5	0.8450
AT3G54630			unknown protein		Lus10030584 [exp]	7.1	0.7724
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	7.2	0.8203
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	13.1	0.8608
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	14.8	0.8051
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	18.7	0.7996

Compare expression of checked genes

Lus10003855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.