Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10070 292 / 1e-99 RNase L inhibitor protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002091 [exp] 391 / 1e-138 AT5G10070 269 / 1e-90 RNase L inhibitor protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080300 [exp] 340 / 8e-119 AT5G10070 367 / 3e-129 RNase L inhibitor protein-related (.1.2) Potri.007G087000 [exp] 74 / 6e-17 AT5G10070 64 / 2e-13 RNase L inhibitor protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [flax] [poplar] 4Fe-4S PF04068 [flax] [poplar] RLI Possible Fer4-like domain in RNase L inhibitor, RLI CL0344 [flax] [poplar] PF04034 [flax] [poplar] Ribo_biogen_C Ribosome biogenesis protein, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10003856 pacid=23163351 polypeptide=Lus10003856 locus=Lus10003856.g ID=Lus10003856.BGIv1.0 annot-version=v1.0 ATGGGCCACAGTAAACCGAGGCGATTCAGAAAAAACTATTCTGATCATCGAGCGGAGTCCCACAGAACCAACATCCAGCCAGATAGGGAAGATGAGTCTC TTCCTAATGGTCAAGCTCCCGAAGAAGAAACCACAGCTCCGAAAATCCAACTTGCAATGTGGGATTTTGGTCAGTGTGATGCAAAAAGATTAAGCTGCAA AATGATTGCTTCGAATGTAGTTAACACTTGGGTTTTGGCAAAATTTCGCGCAGGAATTGCGAGTCATCCTGTTGGGACTCAGTGTGTATCTAAGGAAGAC CATAGCTTAATTCAGAGGAAAGGAATGGCTGTTGTGGATTGCTCATGGGCTCGTTTGAATGATGTACCTTTCGTGAAGCTGAAATGCCCTGCTCCTCGCT TGTTGCCATGGCTTGTAGCAGCAAATCCTGTAAACTACGGGCGTCCTTGCGAATTATCGTGTGTGGAGGCTCTAGCTGCAGCTTTAATCATATGTGGGGA ACTGGAAACAGGACACTTGTTGCTAAGCAAGTTCAAATGGGGTCATGCTTTTCTTTCTCTCAACAGTGAACTTCTGAAGGCCTACTCTGGATGCTCATCT GGTGCTGAGGTTATTTCGGTTCAAAACGAGTGGCTTGCTGAACAGAGGCAAGTTCCAAAAGCAGTTCCAGAGACTGAAGGATCAAGCAAAAAACACCGAG AAGAGGACGGTGTGGAAGACTCCGATGACGACCAGGATGATGATGGGCTTCCGCCACTTGAGAAGAACATGAATCATTTGAGCATCGAGGAAAGTGATGA AGATGAATGA
AA sequence Show only first row Show all	>Lus10003856 pacid=23163351 polypeptide=Lus10003856 locus=Lus10003856.g ID=Lus10003856.BGIv1.0 annot-version=v1.0 MGHSKPRRFRKNYSDHRAESHRTNIQPDREDESLPNGQAPEEETTAPKIQLAMWDFGQCDAKRLSCKMIASNVVNTWVLAKFRAGIASHPVGTQCVSKED HSLIQRKGMAVVDCSWARLNDVPFVKLKCPAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGELETGHLLLSKFKWGHAFLSLNSELLKAYSGCSS GAEVISVQNEWLAEQRQVPKAVPETEGSSKKHREEDGVEDSDDDQDDDGLPPLEKNMNHLSIEESDEDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	0	1
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	1.0	0.9125
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	3.9	0.8891
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	8.9	0.8806
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	9.7	0.8893
					Lus10001241 [exp]	11.7	0.8872
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	13.3	0.8771
AT1G09050			unknown protein		Lus10037506 [exp]	14.5	0.8819
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	16.1	0.8825
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	20.5	0.8745
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	20.7	0.8755

Compare expression of checked genes

Lus10003856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.