Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 404 / 5e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 380 / 2e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 371 / 4e-119 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 359 / 9e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 352 / 8e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62260 339 / 2e-107 MEF9 mitochondrial editing factor 9 (.1) AT2G13600 335 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 331 / 4e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 310 / 1e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G32415 308 / 9e-95 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002092 [exp] 915 / 0 AT4G02750 271 / 3e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 394 / 6e-127 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030549 [exp] 358 / 8e-114 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 355 / 9e-114 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 357 / 1e-113 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 349 / 3e-112 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10016425 [exp] 327 / 1e-101 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015898 [exp] 319 / 1e-98 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 318 / 1e-98 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 411 / 7e-134 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 390 / 2e-126 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G038400 [exp] 385 / 1e-125 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 384 / 1e-123 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 369 / 2e-118 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 345 / 9e-110 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.003G081700 [exp] 326 / 4e-102 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087300 [exp] 327 / 5e-102 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 323 / 9e-100 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 312 / 2e-98 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003857 pacid=23163348 polypeptide=Lus10003857 locus=Lus10003857.g ID=Lus10003857.BGIv1.0 annot-version=v1.0 ATGCCAACACTCTTCAGCTCTCCCTTACCTCAAGCCTCTCAACTCCAAGCTCTCCAGTTTAATGAAAGTTGGGCTGGTCGAGGATGCCCAGAACCTGTTC GACGAAATGCCAAGCAGAAATGTCGTACTTGGAACACTATGATCAACGGCTATTTCAAGAATGGCAAGTCAGACAAGGCATTTGCACTGTTGGGTTTGAT CCCTAAACCCAATATCTACACTTACAACACTGTGATCTCAGGGTTGGCGCAGTGTGGCGATCTGCTTGGTGCTAGGACGGTGTTTGAAGAGATGGAGGTC CGAGATTCGGTTAGCTGGAACTCCATCATCACTGGTTATGTTCATGGTGGGAGGGTTGGTGAAGCGTTGGAGCTGTTTCGTGAAATGCCTGTGGAGATGA GAAATGTAGTTACTTTGAACTTGATCATTAGTGGACTGGTGAATGATCAACAAATCGAGTTAGCTATGGAATGTTTTTGCCAAATGGAACTCAAGGACAC AGTGTCTTGGATTATTATGGTGTCTGAATTGGCGAAAGAGGGTCGACTTGCTGAAGCTCATGAGTTGTATGACCAGATGATTCAAAAGCATCCCCATGCT TGCAATTCACTGATCGCTGGATACATTCGAGTCGGGAAATTCAACATGGCTGAAAACTTGTTTCTTGTTGCAGAACAAAAGGATTCTGATTCGTGGAGGC TAATGATAAATGGACTCGTCACTTGTGGAAGACTCAGTGAAGCAGTTAGACTCTACATTAAAGCACCCGAGAAGTGTCACACTACGTGGAATGCTCTCCT GCTAAGACTAGTAAAGAACGGATCAGCTAGAACAGCTCATGTCCTCCTTGAAAAGCTTCCATATGGCGACATTGTGTCGTGGACGAACATAATAGTCGGA TATTTCAGCTCCGGCGAAGTCGGACATGCCCTTAAAGTTTTTGATTCAATCCCTAGCCTAGATGTGACTCTATGGAATGTGATGATATGCAGACTAGGAG AAAACGGTCACGGCGAGGAAGGAATTAGATTGTTCATGAGAATGAAACAGTTAGGGTCATCATCACCTGATAAGTCAACGTTCACCAGCGTTTTGACAAT CTGTTCCAACTTACCAGCCTTATGCCTTGGGGAACAAGTTTGTGGACACATCATCAAGACCAGGTTCAGTCAAGCAGTCGAGGTACGTAACGCAACGATC ACTATGTACGCCAGATGCGGGAATATGAGCTCTGCTATGTTGGAGTTCTCCTCGATGCCGAACCGTAACGTCATCTCGTGGAACTCGATCATCTGCGGAT TCGCTCACCATGGATACGGTGTACAGGCGCTCGAGATGTTCGAAGAAATGAGATCAAGTGACGTCGTGAAACCAAACCAGTTGACTTTTATCGGTGTTAT GTCGGCGTGTAGCCATGCAGGATTGGTTGAGCAAGGTAAATACTACTTTGATTATATGAAGAACAAATGCTCCCTGCAGCCTACAGGTGAGCATTACACT TGCATCGTTGATCTGTTAGGACGGTTTGGACTGATTGATGAGGCCATGAGTTTCATCGATGAAATGAGAGAAGTTCCGGTTAGTGTTTGGGGAGCTTTAC TCGGAGCCTGTAGAGTCCACAGAAATTTTGAGGTTGGTGTGATTGCTGCTGAGAATGTTTTGGCATTGGAACCTGATAGATCGGGGGCGTATTTGATTTT TGCGGAAATGTATGCGAGTGTTGGGAGACGGGACGAGGCTGAGAGAGTTCTAGCTCGAATGAAGAAGAGTGGAGTGAAGAAACAACCGGGATGTAGCTGG ATCGAGATGAACGACTGTGGATGTGTTTTCCTTTCTGGGGACAAGTCACACCTTGAGTTTAGTAGAATGAAACAACTTTTGGAGATGCTGCACATGGATG TTGATGCTGCTATGAATGCATCTTCGTCGGATCAAATTGAAGTTCACCAAGAATTTTGA
AA sequence Show only first row Show all	>Lus10003857 pacid=23163348 polypeptide=Lus10003857 locus=Lus10003857.g ID=Lus10003857.BGIv1.0 annot-version=v1.0 MPTLFSSPLPQASQLQALQFNESWAGRGCPEPVRRNAKQKCRTWNTMINGYFKNGKSDKAFALLGLIPKPNIYTYNTVISGLAQCGDLLGARTVFEEMEV RDSVSWNSIITGYVHGGRVGEALELFREMPVEMRNVVTLNLIISGLVNDQQIELAMECFCQMELKDTVSWIIMVSELAKEGRLAEAHELYDQMIQKHPHA CNSLIAGYIRVGKFNMAENLFLVAEQKDSDSWRLMINGLVTCGRLSEAVRLYIKAPEKCHTTWNALLLRLVKNGSARTAHVLLEKLPYGDIVSWTNIIVG YFSSGEVGHALKVFDSIPSLDVTLWNVMICRLGENGHGEEGIRLFMRMKQLGSSSPDKSTFTSVLTICSNLPALCLGEQVCGHIIKTRFSQAVEVRNATI TMYARCGNMSSAMLEFSSMPNRNVISWNSIICGFAHHGYGVQALEMFEEMRSSDVVKPNQLTFIGVMSACSHAGLVEQGKYYFDYMKNKCSLQPTGEHYT CIVDLLGRFGLIDEAMSFIDEMREVPVSVWGALLGACRVHRNFEVGVIAAENVLALEPDRSGAYLIFAEMYASVGRRDEAERVLARMKKSGVKKQPGCSW IEMNDCGCVFLSGDKSHLEFSRMKQLLEMLHMDVDAAMNASSSDQIEVHQEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	2.2	0.8371
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	3.9	0.8142
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	4.5	0.8037
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	6.3	0.8262
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	7.5	0.7983
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	8.5	0.8070
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	9.4	0.7919
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	14.5	0.7440
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	15.6	0.7517
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	15.6	0.7775

Compare expression of checked genes

Lus10003857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.