Plant FIBer expression Database

Lus10003858 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18170 782 / 0 GDH1 glutamate dehydrogenase 1 (.1)
AT3G03910 768 / 0 GDH3 glutamate dehydrogenase 3 (.1)
AT5G07440 704 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3)
AT1G51720 129 / 1e-32 Amino acid dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005697
[exp]
814 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1)
Lus10020288
[exp]
811 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1)
Lus10032509
[exp]
700 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Lus10043007
[exp]
582 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Lus10006872
[exp]
125 / 4e-31 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1)
Lus10037612
[exp]
101 / 5e-23 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058300
[exp]
793 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1)
Potri.019G034800
[exp]
781 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1)
Potri.015G111000
[exp]
712 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Potri.012G113500
[exp]
711 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Potri.001G199600
[exp]
130 / 1e-32 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0603 AA_dh_N PF02812 ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CL0063 NADP_Rossmann PF00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Representative CDS sequence
>Lus10003858 pacid=23163341 polypeptide=Lus10003858 locus=Lus10003858.g ID=Lus10003858.BGIv1.0 annot-version=v1.0
ATGAACGCATTAGCAGCAACTAACCGAAACTTCAAGCTAGCATCTAGGCTGCTGGGTCTGGATTCCAAGCTTGAGAAGAGTTTGCTCATCCCTTTTAGAG
AAATCAAGGTTGAGTGCACCATTCCAAAAGACGATGGAACTTTAGCATCTTTCATCGGGTTTAGGGTTCAGCATGATAATGCAAGAGGACCCATGAAAGG
AGGAATCAGATATCATCCAGAGGTTGAGCCAGATGAAGTGAATGCACTAGCACAGCTGATGACATGGAAAACAGCGGTGGCTAATATACCTTACGGAGGT
GCTAAAGGTGGGATTGGCTGTTCTCCAGGAAAATTGAGCATTTCAGAGCTAGAAAGACTTACCAGGGTTTTCACCCAAAAGATTCATGATTTGATTGGAA
TTCATATTGATGTTCCTGCCCCTGATATGGGTACTGGCCCTCAGACCATGGCTTGGATTCTAGACGAATACTCCAAGTTCCATGGCCACTCACCTGCTGT
GGTCACAGGGAAGCCTATTGATCTCGGTGGATCTCTTGGTAGAGATGCTGCCACTGGGAGAGGAGTGCTGTTTGCAACTGAAGCATTGCTTAATGAGCAT
GGAAAATCTGTTTCTGGACAGCGATTTGTCATACAGGGGTTTGGTAATGTGGGTTCGTGGGCATCCCAACTGATTCACGAGCAAGGTGGGAAAGTTGTTG
CAGTAAGTGACATCACTGGTGCTATTAAGAACAGCAAAGGAATTGATATCCCAGCTCTCCTTAAGCATGTCAAGGACAATAAAGGTGTCAAAGGGTTCCA
CGGAGCTGAACCCATTGATCCCAGTTCAATATTAGTTGAAGACTGTGACATCCTCATTCCAGCTGCTCTTGGAGGTGTCATCAATAGGGAAAATGCAAAT
GAGATAAAGGCCAAATTCATCGTTGAAGCTGCTAATCATCCAACCGATCCAGAAGCTGATGAGATATTGTCAAAGAAAGGTGTAGTAATTCTTCCGGATA
TTTATGCAAACTCTGGAGGAGTTACTGTCAGTTACTTTGAGTGGGTGCAGAACATCCAAGGATTCATGTGGGAGGAAGAGAAAGTGAATGGGGTGCTGAA
GACATACATGACCAAAGGGTTCAAGGATGTGAAGGAGATGTGCAAAACCCACAACTGCGATCTGAGAATGGGAGCCTTCAGTCTGGGAGTTAACCGGGTT
GCGCGAGCTACTGTTCTTCGAGGCTGGGAAGCCTAA
AA sequence
>Lus10003858 pacid=23163341 polypeptide=Lus10003858 locus=Lus10003858.g ID=Lus10003858.BGIv1.0 annot-version=v1.0
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGG
AKGGIGCSPGKLSISELERLTRVFTQKIHDLIGIHIDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEH
GKSVSGQRFVIQGFGNVGSWASQLIHEQGGKVVAVSDITGAIKNSKGIDIPALLKHVKDNKGVKGFHGAEPIDPSSILVEDCDILIPAALGGVINRENAN
EIKAKFIVEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNGVLKTYMTKGFKDVKEMCKTHNCDLRMGAFSLGVNRV
ARATVLRGWEA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Lus10003858
[exp]
0 1
Lus10028488
[exp]
1.0 0.9535
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10022195
[exp]
9.1 0.9090
AT1G07180 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL ... Lus10006731
[exp]
10.7 0.8741
AT1G21000 PLATZ transcription factor fam... Lus10023411
[exp]
11.0 0.8893
AT3G54420 ATCHITIV, CHIV,... CHITINASE CLASS IV, homolog of... Lus10003226
[exp]
11.0 0.8858
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Lus10007631
[exp]
12.5 0.9062
AT1G78780 pathogenesis-related family pr... Lus10018919
[exp]
12.5 0.8779
AT3G06880 Transducin/WD40 repeat-like su... Lus10034937
[exp]
15.0 0.8335
AT4G12410 SAUR-like auxin-responsive pro... Lus10024600
[exp]
15.4 0.8755
AT2G18570 UDP-Glycosyltransferase superf... Lus10041713
[exp]
17.3 0.8823

Lus10003858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.