Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03750 310 / 1e-104 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G23740 104 / 2e-24 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT3G04380 96 / 6e-22 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 93 / 1e-20 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT2G35160 89 / 2e-19 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 87 / 8e-19 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G76710 84 / 1e-17 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G73100 81 / 9e-17 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G43990 79 / 4e-16 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT5G04940 77 / 3e-15 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013623 [exp] 520 / 0 AT3G03750 320 / 3e-108 SET domain protein 20 (.1.2) Lus10016788 [exp] 103 / 6e-24 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 102 / 1e-23 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10012513 [exp] 99 / 9e-23 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 96 / 3e-22 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 97 / 7e-22 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10011011 [exp] 94 / 8e-21 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10016600 [exp] 93 / 1e-20 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10005476 [exp] 92 / 1e-20 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064600 [exp] 342 / 5e-117 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.005G129800 [exp] 106 / 3e-25 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.007G033000 [exp] 104 / 2e-24 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G195400 [exp] 99 / 6e-23 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.002G257400 [exp] 99 / 2e-22 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 97 / 4e-22 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.014G192500 [exp] 97 / 7e-22 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.009G138600 [exp] 94 / 6e-21 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.003G083100 [exp] 92 / 4e-20 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.005G182100 [exp] 86 / 3e-18 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10003864 pacid=23163356 polypeptide=Lus10003864 locus=Lus10003864.g ID=Lus10003864.BGIv1.0 annot-version=v1.0 ATGCCAAAAATGGGGACGGAGAAGCACCGGAAGCAAAGCGACGGTGAAGAAGACCCAAATGCAACTCCGTTCATCAACTGCGCGGAGCTCATCCTCCCAT GGCTAACCCCGCAAGAACTCGCCACCGTCGCCTCCACCTGCAAATACCTAGCACAACTCACCCGCATCATCACTCTCCATCGATCCTCCGACGCTTCGAG ATCGTTGGAGAAACTTCCCATTCCTTTCCATAGCTCCGCGCAATCTCCCCGATACACCTATTTCCTATACTCCCCAACTCAGCTGCTGTCGTCGCAATCC CCCGATCGACAGCCCTGGGGCTTCCCTAATTTCTACGCCGACTCACCGGCGCTCCATGCGACTGATAGCGGTTGCGGATGCGGTTGCGAAGGATGCGGAA GAGGCGATGGACGTTTGGAATTGGAAGAGCTGGAATTAGGAGTGCTGAGCGAGTGTGGACCGAGTTGCGGGTGCGGGTTTGAATGCAGGAATCGGTTGAC TCAAAGAGGGATTAGGGTTAAACTGAAGATCGTTTGGGATGAGAAGAAAGGCTGGGGTTTGTTCGCTGATCAGTTGATTCCACAATGCCAATTCATCTGC GAGTATACCGGAGAACTCTTGACAACCGCCCAAGCAAGACGACGGCAACAGGTCTACGACGACCAACTCTCTTGTTCTTCTGCTCTTTTGGTTGTGAGAG AGCATCTGCCGTCGGGAAAGGCTTGTTTGAGGGTGAACATTGATGCGACCAAGATTGGGAATGTGGGAAGATTCATAAACCATTCTTGTGATGGTGGTAA CCTGTGTACAGCAACAGTGAGGAGCCCCGGAGCTTGCTTTCCTCGTCTCTGTTTCTTTGCTAGTAGAGACATTCAAGTTGGGGAAGAGCTCAGTTTTAGT TATGGTGAAACTAGGGTGAGGTCTAATGGTCTGCAGTGCTTCTGTGACAGCTCTTCTTGCTCTGGAACTTTACCTTCAGAAGTGACTTAG
AA sequence Show only first row Show all	>Lus10003864 pacid=23163356 polypeptide=Lus10003864 locus=Lus10003864.g ID=Lus10003864.BGIv1.0 annot-version=v1.0 MPKMGTEKHRKQSDGEEDPNATPFINCAELILPWLTPQELATVASTCKYLAQLTRIITLHRSSDASRSLEKLPIPFHSSAQSPRYTYFLYSPTQLLSSQS PDRQPWGFPNFYADSPALHATDSGCGCGCEGCGRGDGRLELEELELGVLSECGPSCGCGFECRNRLTQRGIRVKLKIVWDEKKGWGLFADQLIPQCQFIC EYTGELLTTAQARRRQQVYDDQLSCSSALLVVREHLPSGKACLRVNIDATKIGNVGRFINHSCDGGNLCTATVRSPGACFPRLCFFASRDIQVGEELSFS YGETRVRSNGLQCFCDSSSCSGTLPSEVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	0	1
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	5.3	0.7528
AT4G00525			unknown protein		Lus10030386 [exp]	5.7	0.7913
AT1G02290			unknown protein		Lus10018907 [exp]	7.6	0.7708
AT2G45520			unknown protein		Lus10009304 [exp]	9.9	0.7652
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	11.5	0.7651
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	14.5	0.7432
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	14.7	0.7526
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	16.1	0.7606
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	18.0	0.7499
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	19.9	0.7484

Compare expression of checked genes

Lus10003864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.