Plant FIBer expression Database

Lus10003866 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28740 150 / 4e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022346
[exp]
162 / 6e-47 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10041573
[exp]
161 / 5e-46 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10022347
[exp]
51 / 5e-08 AT5G28740 301 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G035600
[exp]
162 / 2e-46 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10003866 pacid=23163342 polypeptide=Lus10003866 locus=Lus10003866.g ID=Lus10003866.BGIv1.0 annot-version=v1.0
ATGGAGCTGATTCTAACAGGGTTGCCGATTGAGACTTGTTTGAGGGTTTACAGGAGGTATTTGAAGTATGATCCCAGTCGGGTTGAGGATTTCATTGATT
TCTTGGTGGATTCTGGTCTTTGGCAAGAGGCGGCTGAGAGGTTGGCGTCAGTTTTGAACGATGACCAGTTTTGTTTGTTGAAAGGGAAAACGAAGCACAC
GTTAAGGCTTGAATTCTGCCACCTGCTAACCAGGGTGAAGCTATTTGAGGGTGATCCCAGTAAGCAGCTATTGACGTATACTGAAGCTGTAAGAACGGTT
GACCCCACGAAAGCAGTTGGAAAGCCTCACACTCTTTGGGTTGCTTTTGCAAAGCTGTATGAAGAACATAATGATCTTGTAAATGCCAGAGTGATCTTCG
ATAAGGCTGTGCAAGGAAGTTACAACACTGTTGATAACTTGGCCAGCGTGTGGTGTGAGTGGACAGAGATGGAAATCAGACAAGAATTTCAAACCTGCTT
TGGAGCTTCTAAGGCAGGCAACATGCTAAGGAGAGACACATGA
AA sequence
>Lus10003866 pacid=23163342 polypeptide=Lus10003866 locus=Lus10003866.g ID=Lus10003866.BGIv1.0 annot-version=v1.0
MELILTGLPIETCLRVYRRYLKYDPSRVEDFIDFLVDSGLWQEAAERLASVLNDDQFCLLKGKTKHTLRLEFCHLLTRVKLFEGDPSKQLLTYTEAVRTV
DPTKAVGKPHTLWVAFAKLYEEHNDLVNARVIFDKAVQGSYNTVDNLASVWCEWTEMEIRQEFQTCFGASKAGNMLRRDT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G28740 Tetratricopeptide repeat (TPR)... Lus10003866
[exp]
0 1
AT3G16340 ABCG29, ATPDR1,... ATP-binding cassette G29, plei... Lus10013123
[exp]
4.5 0.7585
AT1G04980 ATPDI10, ATPDIL... ARABIDOPSIS THALIANA PROTEIN D... Lus10034528
[exp]
6.2 0.7829
Lus10012672
[exp]
9.5 0.7706
Lus10004451
[exp]
20.6 0.7358
AT1G30825 DIS2, ARPC2, AR... DISTORTED TRICHOMES 2, ACTIN-R... Lus10002867
[exp]
22.4 0.7481
Lus10010245
[exp]
26.5 0.6730
AT4G31115 Protein of unknown function (D... Lus10018151
[exp]
41.0 0.6834
AT5G52260 MYB ATMYB19 myb domain protein 19 (.1) Lus10005740
[exp]
44.4 0.7208
AT2G44890 CYP704A1 "cytochrome P450, family 704, ... Lus10038000
[exp]
49.2 0.7295
AT1G33590 Leucine-rich repeat (LRR) fami... Lus10006160
[exp]
60.5 0.6659

Lus10003866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.