Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33110 649 / 0 MATE efflux family protein (.1.2) AT1G33080 633 / 0 MATE efflux family protein (.1.2) AT1G33090 631 / 0 MATE efflux family protein (.1) AT1G33100 628 / 0 MATE efflux family protein (.1) AT5G65380 462 / 5e-160 MATE efflux family protein (.1) AT5G44050 460 / 6e-159 MATE efflux family protein (.1) AT3G03620 437 / 6e-150 MATE efflux family protein (.1) AT5G17700 435 / 5e-149 MATE efflux family protein (.1) AT5G10420 426 / 9e-146 MATE efflux family protein (.1) AT1G47530 421 / 8e-144 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020307 [exp] 687 / 0 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 486 / 2e-169 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 484 / 2e-168 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 475 / 2e-164 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 467 / 6e-162 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10013626 [exp] 464 / 6e-162 AT1G33110 365 / 2e-123 MATE efflux family protein (.1.2) Lus10042130 [exp] 438 / 2e-150 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 436 / 9e-150 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 435 / 1e-145 AT5G65380 651 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069700 [exp] 769 / 0 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.013G069600 [exp] 501 / 4e-175 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 499 / 3e-174 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 492 / 1e-171 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 487 / 1e-169 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.007G010200 [exp] 479 / 2e-166 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 476 / 2e-165 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 469 / 9e-162 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 451 / 3e-155 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.011G002900 [exp] 431 / 2e-147 AT3G21690 654 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10003869 pacid=23163347 polypeptide=Lus10003869 locus=Lus10003869.g ID=Lus10003869.BGIv1.0 annot-version=v1.0 ATGGCTAGCAAGGAGGACTTAAACCAGAAGCTTTTGACGAAAACTTCGGATGCACAACAGCAAGATCAAGAAGAAGAATTACCCTTGGGGACCAAGCTAT GGACGGAGGCCAAGAAGATGTGGGTTGTGGCTGCTCCGGCAACTTTCACCAGATTCTCCACCTTCGGAATCAACGTTGTCAGTCAGGCCTTTATCGGACA CATAGGCTCAACTGAACTCGCTGCTTATTCACTCGTCTTCACTGTCCTCTTGAGATTCGCTAACGGAGTGCTCCTTGGTATGGCTAGCGCTTTAGAAACT CTATGTGGGCAATCATTTGGTGCAAAACAGTACCATATGTTGGGAGTGTACCTGCAGAGGTCTTGGATCGTTTTGATCTTGTGCGCAACTTTGATGCTCC CCATATTTGTGTTCACCACTCCACTGTTAGAGTTGTTAGGCCAGGAGGTTTACATTGCGAAAGTGGGAGGAACTATCTCTCTATGGTTGATCCCTGTGAT GTTCTCTTCCATTGTATCCTACACCTGCCAGATGTTCCTTCAGGCGCAGAGTAGGAACTTGCTCATTGCGTATCTTGCAGCTGCATCAATGACTATCCAC ATCTTTCTTTCCTGGCTTTTGACAATGAAGTACAAACATGGGATCCCGGGAGCAATGATCTCCACGATCTTGGCTTATTGGATCCCTAATATTGGTCAGA TGTGCTATGTTACTTGTGGTGGTTGCCCACAAACGTGGAAAGGTTTTTCCTTTTTGGCCTTTAAAGATCTTTGGCCTGTTGTCAAGCTCTCCGTGTCATC TGGTGCCATGCTTTGCCTTGAGCTCTGGTACAATACTGTGTTGGTTCTTCTGACAGGGAACATGAAGAATGCAGAGGTTGCTATTGATGCTCTTGCTATC TGCCTTAACATCAATGGATGGGAGATGATGATCTCACTTGGTTTCTTGGCAGCAGCCAGTGTGAGGGTGTCAAATGAACTTGGGAGAGGGAACTCCAAAG GTGCCAAGTTTGCAATTGTTATGACAGTTGCAACATCATTCGTCATTGGTGTCATTCTATTTGTAGTTTTCCTATTCCTGAGAGGGAAAGTTGCTTACTT GTTCACCGAAAGTTCCCAAGTTGTGGATGCCGTTGCTGATCTTTCGCCACTGCTTGCCTTCTCCATCCTCCTCAACAGCATACAACCAGTGCTTTCCGGT GTTGCTATTGGAGCTGGATGGCAGAGCATTGTGGCGTACGTCAACATAGCCTGCTATTATCTTGTTGGGATCCCAGTTGGAGTTGTTCTTGGATATGTGT TCGACATGCAAGTTAAAGGTGTCTGGATTGGAATGTTAATCGGTACATTCATCCAAACCATCATTCTTATGGTGATCACCTACAAAACTGACTGGGACAA ACAGGTTCTTCTTGCTCGTAATCGAGTTAACAGGTGGTACAAACCAGTAGCAGATTCTGAAGAGGGAAGCTAG
AA sequence Show only first row Show all	>Lus10003869 pacid=23163347 polypeptide=Lus10003869 locus=Lus10003869.g ID=Lus10003869.BGIv1.0 annot-version=v1.0 MASKEDLNQKLLTKTSDAQQQDQEEELPLGTKLWTEAKKMWVVAAPATFTRFSTFGINVVSQAFIGHIGSTELAAYSLVFTVLLRFANGVLLGMASALET LCGQSFGAKQYHMLGVYLQRSWIVLILCATLMLPIFVFTTPLLELLGQEVYIAKVGGTISLWLIPVMFSSIVSYTCQMFLQAQSRNLLIAYLAAASMTIH IFLSWLLTMKYKHGIPGAMISTILAYWIPNIGQMCYVTCGGCPQTWKGFSFLAFKDLWPVVKLSVSSGAMLCLELWYNTVLVLLTGNMKNAEVAIDALAI CLNINGWEMMISLGFLAAASVRVSNELGRGNSKGAKFAIVMTVATSFVIGVILFVVFLFLRGKVAYLFTESSQVVDAVADLSPLLAFSILLNSIQPVLSG VAIGAGWQSIVAYVNIACYYLVGIPVGVVLGYVFDMQVKGVWIGMLIGTFIQTIILMVITYKTDWDKQVLLARNRVNRWYKPVADSEEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33110			MATE efflux family protein (.1...		Lus10003869 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	7.3	0.8738
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	11.5	0.8057
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	18.9	0.8577
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Lus10023139 [exp]	20.0	0.8306
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	20.4	0.8366
AT5G20045			unknown protein		Lus10019440 [exp]	23.8	0.8628
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	30.0	0.8465
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	31.6	0.8489
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	32.9	0.8027
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	56.8	0.8327

Compare expression of checked genes

Lus10003869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.