Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45400 644 / 0 exostosin family protein (.1) AT3G03650 571 / 0 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G74680 491 / 1e-171 Exostosin family protein (.1) AT1G67410 328 / 3e-108 Exostosin family protein (.1) AT2G35100 257 / 3e-80 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 234 / 9e-72 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G16890 217 / 2e-64 Exostosin family protein (.1) AT1G34270 213 / 5e-63 Exostosin family protein (.1) AT5G33290 85 / 2e-17 XGD1 xylogalacturonan deficient 1 (.1) AT2G28110 83 / 7e-17 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005684 [exp] 778 / 0 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 758 / 0 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 662 / 0 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10002060 [exp] 510 / 1e-178 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10024214 [exp] 446 / 6e-154 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10015791 [exp] 314 / 2e-102 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 312 / 1e-101 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 275 / 5e-87 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 269 / 2e-83 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067400 [exp] 701 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 692 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 536 / 0 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 315 / 1e-102 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.015G124800 [exp] 265 / 3e-83 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 265 / 5e-83 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 228 / 8e-69 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 223 / 7e-67 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 221 / 6e-66 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 148 / 2e-43 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10003870 pacid=23163354 polypeptide=Lus10003870 locus=Lus10003870.g ID=Lus10003870.BGIv1.0 annot-version=v1.0 ATGGGTGAAAAGAGACACGGAAGTTGGTCAATTGGAACGGTCGCCGGAAAACAAGTGTGGTGGTTGTTTCCTTTTTTCACCGCCTTGTTCCTATTCTCCT GGTTTTCCGTCCTTGGTTCCACCGCCAAGCCTAATTTCCTCGACCGTGCATTTTTACCCACCCTCACCACCCTTTCTGTCCTTCAAAACGAGATATCTCA GCCCTCCGCTCCATCTTCCACTTTCCGTGCTCTTCTCGTCGACGATGATGATGCCACCACATCAGAAATTGACAACATCGTGAATTGCGAAAGAAGCTCC TCACTCAAGCCACTCAAGGTTTTCATGTATGATATGCCTCCCGAATTCCATTTCGAGCTCTTAGATTGGAAAGCTGAGGTGAATGGCAGTGTATGGCCAG ACATAACAAAACACATACCAGGTTACCCAGGTGGGTTGAATCTGCAGCACAGTATAGAATACTGGCTGACATTGGATCTCCTTGCATCCGAATTCCCTCG AATTCCTAGAGCTGGCGGTGCCGTTCGAGTTAAAAATTCCAGCGATGCTGATGTGGTATTCGTACCTTTCTTCTCCTCACTCAGCTATAACCGGTTCTCG AAAGTGAATCCCCACCAGAAGAAGAGCAGGAATAATGTGTTGCAGGATAAGCTGGTGGAGTACTTGACATCACAGGAGGAATGGAAAAGGTCTGGCGGCA AAGATCATGTTGTCATGGCTCACCATCCTAATAGCATGTTGACTGCCAGGATGAAGCTTTGGCCTGCAATGTTCATACTCTCGGATTTCGGGAGGTATCC TCCGAATGTGGCTAATGTCGAGAAAGATGTGATTGCTCCTTACAAGCACATCATTAAGAGCTATGTTAACGACTCGTCCGAGTTTGATACTCGTCCCACT CTGCTCTACTTCCAAGGAGCCATTTACAGAAAAGATGGTGGACTGGCCAGGCAAGAGCTGTTTTATCTGCTGAAAGATGAAAAGGACGTGCATTTCCAAT TCGGCAGCGTGAAGAATGATGGTATCCACAAGGCTTCGATAGGGATGCATTCTTCGAAGTTCTGCCTAAACATAGCAGGGGACACACCATCTTCGAACCG GCTCTTTGACGCCATAGTCAGCCACTGCGTTCCTGTGATCATCAGTGACGACATTGAACTCCCGTACGAAGATGTCCTGGACTACTCGGAGTTCTGCATA TTCGTCAAGACCTCTGATGCCATTAAGGAGAATTATCTCATCAACTTCATAAGGAGCATAAAAAAGGAAGAGTGGACAAGGATGTGGCAGAGGCTCAAGG AAGTGGAGCATCTTTTCCAGTTTCAATATCCTTCGAGGGAAGGGGACGCAGTCCAAATGATATGGCAGGCAGTTGCCAGGAAGGTTCCAGGGATCAAGAT GAAGATGCACAAGTCTATGAGATACTCTCGTTTTGTTTCTAACCAGAAAGGAGGAGTTTCTAATAGAGTTATACGAACACCTAAGAACTTTTGGTGA
AA sequence Show only first row Show all	>Lus10003870 pacid=23163354 polypeptide=Lus10003870 locus=Lus10003870.g ID=Lus10003870.BGIv1.0 annot-version=v1.0 MGEKRHGSWSIGTVAGKQVWWLFPFFTALFLFSWFSVLGSTAKPNFLDRAFLPTLTTLSVLQNEISQPSAPSSTFRALLVDDDDATTSEIDNIVNCERSS SLKPLKVFMYDMPPEFHFELLDWKAEVNGSVWPDITKHIPGYPGGLNLQHSIEYWLTLDLLASEFPRIPRAGGAVRVKNSSDADVVFVPFFSSLSYNRFS KVNPHQKKSRNNVLQDKLVEYLTSQEEWKRSGGKDHVVMAHHPNSMLTARMKLWPAMFILSDFGRYPPNVANVEKDVIAPYKHIIKSYVNDSSEFDTRPT LLYFQGAIYRKDGGLARQELFYLLKDEKDVHFQFGSVKNDGIHKASIGMHSSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDDIELPYEDVLDYSEFCI FVKTSDAIKENYLINFIRSIKKEEWTRMWQRLKEVEHLFQFQYPSREGDAVQMIWQAVARKVPGIKMKMHKSMRYSRFVSNQKGGVSNRVIRTPKNFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	0	1
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	5.3	0.7041
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	6.2	0.7193
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	10.4	0.6981
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	14.3	0.6955
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	20.2	0.7023
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	36.0	0.6887
AT2G40070			unknown protein		Lus10002493 [exp]	37.9	0.6499
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	41.0	0.6799
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	50.3	0.6864
					Lus10006631 [exp]	53.9	0.6640

Compare expression of checked genes

Lus10003870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.