Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17780 361 / 9e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 323 / 8e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 296 / 8e-96 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 296 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1) AT4G24140 277 / 3e-88 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 48 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1) AT5G38360 42 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 42 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013629 [exp] 719 / 0 AT5G17780 430 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008266 [exp] 308 / 4e-100 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033234 [exp] 306 / 1e-99 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003969 [exp] 49 / 5e-06 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 49 / 9e-06 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10002142 [exp] 48 / 1e-05 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10025172 [exp] 46 / 7e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10028315 [exp] 43 / 0.0004 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147400 [exp] 289 / 9e-93 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 285 / 5e-91 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 51 / 1e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G175700 [exp] 48 / 1e-05 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 47 / 2e-05 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 46 / 4e-05 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10003871 pacid=23163352 polypeptide=Lus10003871 locus=Lus10003871.g ID=Lus10003871.BGIv1.0 annot-version=v1.0 ATGTCTCCAGGGAGCAATGCGTCGGCTACAATAAGAAAATCATTATTCCTTACTGGAGCTCTCCACTATGCCCTTACTGTCGTCGTCTTCCTGCTACTGG ACCTTCTGGACGCCCTCTTGTGCGTAATTTACAGGTTTATAGATGAGCATCTTGAAGGGGAAACACAGAAGCTGTGCTATTGTGCGGAGCGAGTTGGAGA TGGCACAATTGAGTTGTCAGAGACGCTGCACGGTAGAAGGAATGTGTTTAGGGAAATGGGTTGTCGTTTCCCCAGCAAAAGATTCAAGCTTCAGCAGGAT GAATCCCACAAGTCCAACGACGGCGGGCGCCCAACAAGCAGAACAAGTGGGAACAGTACTAGTGGGAGATGGTCGGATTGTGGATGCGAGTCGTGTGTTT CTTGGAAAAAGGATGGCGGCGGCCAGAAACTCCACGTTTTGGTGAGGGAGCCATCCTCCTCAGCTACTGGGAATGAAGATGCAATTGAGAATGTGATATT CGTACATGGGTTCATTTCATCTTCATCATATTGGAGTGAATCCGTATTTCCAAATCTCTCGGAACCCGGAAAGCGGAACTACAGACTGTTTGCAGCTGAC CTTTTGGGGTTTGGACAGAGTCCCAAGCCGATGGATTGTTTATACACTCTGCAAGATCACTTGGAGAAGATTGAGGACTCGGTTGTGAAGGCATTTCAGC TCAAATCTTTCCACATCGTTGCCCATTCCATGGGATGCATCATAGCATTGGCCCTTGCGGCTAAGTACTCCCAAACTGTGAAATCCATTACCCTCGTAGC ACCACCGTACTTGTCGAGTTCGAAAGACGAGGAGCCGAGTTCAAGAGCGCTTGAGAAAATTGCCAAGAAGAGACTCTGGCCACCACTCATGTTTGGGGCG GCATTGATGGCATGGTATGAGCACTTGGGACGATGCGTTTGCTTCGTGGTTTGCAGGCACCATAGAGTGTGGGAGAAGCTGGTGATGCTACTTACACGAA GCAGGGAAGTACATTACATGGTGAGGGACTTGACGAGGCACACCCATCATTCGGCCTGGCATACGGTGCACAATGTGATCTGCGGGGGAGCGAGGTGCAT GGATGAGTTGGTAGAAACTGTGATGAGATCTGAGATGACGGTATGTGTGGTTCACGGAGATCAGGACCCTGTGGTTCCATTGGAATGTAGCGTGAAGCTG AAGAGGAAGTTTTGGGATAATAATAAGCAGATGAGATTGGAAGTTGTGGGGAATGGCGACCATACCTCCGTGATTACGGGGAGGGAAAGAGAGTTCACTC GAAGATTAGAGCACATATGGGAGGAGTCATCTTCCTCTTCTCTTTCCATTTAA
AA sequence Show only first row Show all	>Lus10003871 pacid=23163352 polypeptide=Lus10003871 locus=Lus10003871.g ID=Lus10003871.BGIv1.0 annot-version=v1.0 MSPGSNASATIRKSLFLTGALHYALTVVVFLLLDLLDALLCVIYRFIDEHLEGETQKLCYCAERVGDGTIELSETLHGRRNVFREMGCRFPSKRFKLQQD ESHKSNDGGRPTSRTSGNSTSGRWSDCGCESCVSWKKDGGGQKLHVLVREPSSSATGNEDAIENVIFVHGFISSSSYWSESVFPNLSEPGKRNYRLFAAD LLGFGQSPKPMDCLYTLQDHLEKIEDSVVKAFQLKSFHIVAHSMGCIIALALAAKYSQTVKSITLVAPPYLSSSKDEEPSSRALEKIAKKRLWPPLMFGA ALMAWYEHLGRCVCFVVCRHHRVWEKLVMLLTRSREVHYMVRDLTRHTHHSAWHTVHNVICGGARCMDELVETVMRSEMTVCVVHGDQDPVVPLECSVKL KRKFWDNNKQMRLEVVGNGDHTSVITGREREFTRRLEHIWEESSSSSLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	0	1
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	2.4	0.8382
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	3.0	0.8734
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	5.1	0.8699
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	6.2	0.8608
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	6.9	0.8325
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	10.4	0.7981
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	11.0	0.8203
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	11.2	0.8326
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	12.0	0.8274
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	12.3	0.8483

Compare expression of checked genes

Lus10003871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.