Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17790 322 / 2e-98 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G55040 132 / 1e-31 zinc finger (Ran-binding) family protein (.1) AT1G48570 94 / 7e-20 zinc finger (Ran-binding) family protein (.1) AT1G70650 90 / 1e-18 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G53460 43 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013630 [exp] 897 / 0 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 135 / 2e-32 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10009049 [exp] 129 / 1e-31 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 110 / 1e-24 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 108 / 1e-24 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 96 / 7e-21 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10003580 [exp] 80 / 1e-15 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10043289 [exp] 50 / 2e-06 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10019433 [exp] 49 / 3e-06 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067200 [exp] 374 / 9e-117 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 146 / 6e-36 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 145 / 1e-35 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 113 / 4e-26 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 103 / 3e-23 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 105 / 4e-23 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10003872 pacid=23163350 polypeptide=Lus10003872 locus=Lus10003872.g ID=Lus10003872.BGIv1.0 annot-version=v1.0 ATGGGCGGGGCCACTAGACTCTTCACTCTCATCACTTCCACCACAACCTCTTCCTCCCCGCTTCTGCTCCCTCATCACCGTTACTGCCCGGCTCTTCTAC GCCTCTCCCGCCGTCATGGAGACTCTCAAATTTCCATTTATTCCCTTCCCCACCGCTTCCGTTGCTTTCACACTCAGCACCAATCCTCATCGCCGTCTGC TCCTCTGTCCTTCTCCCGCCTCATAAAAACATCCCGCCAAATTCATGTTCGGGCCACCTCCGCCGTCCAGTTTACCAACTCTTCTGACCAGCCTTGTTCG GTCTTCCATCAGTGGTCTGAGTTTTCCAGCTTCATCCACAATATTTCTGCTGCCGGATATTTTAATCGCCAGGGAAATGGGGCTGAGATCGAAGAGTTCG TGGATGCAACGAATTTGCCCGATGACTTTGTTCGAGCTGCTGTTGCTTGCTTAGCTTTTGGGCGTGACAGGCCTGAGATTTTAGGGTTGCTGTCGGGAAG AGATATTGCGACTGTAATCAGTAATGCGAGCCCTTTCCTGTTCAAAAATGCTGAGGAGTTGGTTAAGAAGATGCAGTTGCTTTTGGATGAGCAAAATAAC AATGTGCCAAGCAGTGAAAGGCCGCAAACAGTTGACTTAATGAAGTTTTTGTTGAGTTATGCTAGCAGTGTTATGCTGTTTGAGAACAACAATCTTCAAA AGCAGGATGCGGTCGAGTTATGTGTTCGTAACATCTTTGGTCAGTTGTCCAACTTTAGCTATAATATCCCTCCTAATTATCAATCATCTAGCGGAGTACA AAATCAGTTTGGTGATAGTTTTGCTCAAGGACCAAAGCCAGTTGGATCAACTATTGAAATGAAGAGAGGTGACTGGATCTGCCCAAGGTGTACTTTCATG AACTTCGCGAGGAACAATAAATGCCTTGAATGTGAAGAAGCACGTCCTAGAAAACATCTCACTGGTGGGGAGTGGGAGTGTCCTCAATGTGACTTTTTCA ATTATGGGAGGAACATAGCTTGTCTAAGGTGTGACTGCAAGCGTCCTGGAGAAATATCACTTGGAACAATGGGTTCCGGTCGACGTCTGGGATCTGGAAA TGGAAGCCACACAAGTAACAGCGATACTGTGAGCCGGTTGGCTGCCAATGAAGAGAAGGCACAGAGATGGTTTAGTAAGATCTCTCAGTCTGAAAATCGC TCAGACATTAACATAGCCGAAAGTGACTTTCCTGAAATCATGCCATTGAGAAAAGGAGCCAATAGATTTGTCGTAAGCACGCGGAAGTCTCCTCTTGAGA GGAGGCTAGCTGATGCTGAAAACCGAAGAACCTTCGACAATGAAAGCAGTTATGAGGGTCAAACTACAGATATATTTGCTGAGAATCCAGAAGAAAATGA ACAAGCTGCAAAATCTGATGGATGGTTTAAGAGAGTTGCAGAGTTACATAATGTCACAGACGTGGACAATGCAAGTGCAGATGATGATTTCCCTGAGATG ATGCCAATGCGCAAGGGTGAGAACAGATTTGTGGTTGCGAAGAAGAAAGATCGTTCACTGACCACTCCAACGTACAAGAGACGGATGGCCATGGAGCAAG CAAATGATACAAGTTACGTTCCTTTTGTGCCGTTCCCACCCAACTACTTTGCTAAGAAGGATGGCCAACAGCCAACGGGTAGGGCAGACTTGACAAACAA GGTGATGGAAACTCCAAATTCTTCTAGGCACGAAAGTTCAGACAGCAGCGCGGGACCTGGAGTTTCGAATTCAATTGCCGTTCAGGGAACGAGTAATCAA CAGTATCCCACAAGACAACATGATTCCCCAACTTCTGGCGACAGCATGGTTGAAATGAACAAGAATTCAGCTTTTGACCCTCCAACTCACCGTATGCATT CAAGAAATGACAGTATTGGTGGAGCTCCAAATATGGTTAGCGCACAGCGAAACTCAGCACCAGGGACGCCAAATGTGAATTCGAATTCTGCGGGACCAAC AACTCAATCGTATGGGTGGAGTGGAAAGAGTTTGGAAGGTTCGGCGGTGGAGGAACCGGATGCTCTGGACATGTCAGAAGAGGCAAAAGCGGAGAGGTGG TTCAAACGTGTAGCTCAGATTAAGGACATATCGGAGCTGAGCCAGATACCGGATGAAGACTTCCCATCGATAATGCCAATGCGGAAAGGTGTGAATAGAT TCGTGGTGAGCAAACGGAAAACACCCCTCGAGAGAAGATTGACATCTACCCAGTACAGACGGAATCTTCCGATTGTTAGCTCCGATCAGCCACCGACAAA GACCAACGATGATTCCCAGTAA
AA sequence Show only first row Show all	>Lus10003872 pacid=23163350 polypeptide=Lus10003872 locus=Lus10003872.g ID=Lus10003872.BGIv1.0 annot-version=v1.0 MGGATRLFTLITSTTTSSSPLLLPHHRYCPALLRLSRRHGDSQISIYSLPHRFRCFHTQHQSSSPSAPLSFSRLIKTSRQIHVRATSAVQFTNSSDQPCS VFHQWSEFSSFIHNISAAGYFNRQGNGAEIEEFVDATNLPDDFVRAAVACLAFGRDRPEILGLLSGRDIATVISNASPFLFKNAEELVKKMQLLLDEQNN NVPSSERPQTVDLMKFLLSYASSVMLFENNNLQKQDAVELCVRNIFGQLSNFSYNIPPNYQSSSGVQNQFGDSFAQGPKPVGSTIEMKRGDWICPRCTFM NFARNNKCLECEEARPRKHLTGGEWECPQCDFFNYGRNIACLRCDCKRPGEISLGTMGSGRRLGSGNGSHTSNSDTVSRLAANEEKAQRWFSKISQSENR SDINIAESDFPEIMPLRKGANRFVVSTRKSPLERRLADAENRRTFDNESSYEGQTTDIFAENPEENEQAAKSDGWFKRVAELHNVTDVDNASADDDFPEM MPMRKGENRFVVAKKKDRSLTTPTYKRRMAMEQANDTSYVPFVPFPPNYFAKKDGQQPTGRADLTNKVMETPNSSRHESSDSSAGPGVSNSIAVQGTSNQ QYPTRQHDSPTSGDSMVEMNKNSAFDPPTHRMHSRNDSIGGAPNMVSAQRNSAPGTPNVNSNSAGPTTQSYGWSGKSLEGSAVEEPDALDMSEEAKAERW FKRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSTQYRRNLPIVSSDQPPTKTNDDSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	0	1
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	3.2	0.8705
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037288 [exp]	3.3	0.8500
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	9.5	0.8574
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	9.7	0.8603
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	10.1	0.8757
AT5G08340			Nucleotidylyl transferase supe...		Lus10007496 [exp]	11.9	0.7693
AT1G74120			Mitochondrial transcription te...		Lus10007988 [exp]	13.0	0.8101
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	13.3	0.8693
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	15.6	0.8664
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	15.6	0.8360

Compare expression of checked genes

Lus10003872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.