Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42080 1110 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 1030 / 0 ADL1B DYNAMIN-like 1B (.1) AT3G60190 874 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 862 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 831 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT2G14120 281 / 6e-85 DRP3B dynamin related protein (.1.2.3) AT4G33650 274 / 6e-82 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 188 / 1e-50 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 183 / 7e-49 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60530 118 / 2e-29 DRP4A Dynamin related protein 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001820 [exp] 1209 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 1109 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 1061 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10030255 [exp] 1016 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10019506 [exp] 865 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10019170 [exp] 865 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 829 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 815 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10014041 [exp] 273 / 2e-81 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090600 [exp] 1147 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 1141 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 1063 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.002G135100 [exp] 906 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 900 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 892 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 865 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.017G041800 [exp] 290 / 1e-87 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 288 / 5e-87 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 201 / 1e-59 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10003873 pacid=23144320 polypeptide=Lus10003873 locus=Lus10003873.g ID=Lus10003873.BGIv1.0 annot-version=v1.0 ATGGATAATTTGATCAGTCTTGTTAATAAGATTCAGAGAGCTTGTACGGCTCTCGGTGATCATGGCGAAGCTAGCGCGCTGCCTACTCTCTGGGATTCAC TGCCGGCCATTGCCGTCGTCGGTGGCCAGAGCTCCGGGAAATCGTCTGTGTTGGAGAGCATAGTAGGGAAGGATTTTCTGCCTCGTGGATCTGGGATTGT TACCAGAAGGCCACTTGTATTGCAGCTTCATAAACTTGACGAAGGTAGCAGAGAGTACGCGGAGTTCCTTCACCTTCCGAGGAAAAGGTTCACTGACTTT GCGGCTGTGCGGAAAGAGATCTCAGACGAGACTGATAGAGAGACAGGCCGTTCAAAACAAATTTCTAGCGTTCCCATCCATCTCAGCATATATTCTCCCA ATGTTGTCAACCTTACATTGATTGATCTTCCTGGGCTCACAAAAGTTGCAGTTGAGGGTCAATCCGACAATATTGTGCAGGATATTGAGAACATGGTGCG CTCCTTTATTGAAAAGCCCAACTGTTTAATCTTGGCAATTTCACCTGCAAATCAAGATCTTGCCACGTCTGATGCTATTAAAATTTCCCGTGAGGTGGAC CCATCAGGAGAGAGAACTTTTGGAGTTCTGACAAAGATTGACCTCATGGACAAGGGTACTGATGCAGTAGATACATTGGAGGGGAAATCATTTCGGTTAA AATTTCCTTGGGTTGGTGTTGTGAATCGCTCACAAGCTGACATTAACAAGAACGTGGACATGATTGCTGCACGACGGAGAGAGCGCGAGTATTTTGCTAC CAGTCCAGAGTACAAGCATCTTGCTAATAGAATGGGTTCTGAGCATCTAGCAAAAATGTTATCAAAACATTTGGAAGTTGTAATCAAGTCTAGAATCCCA GGGATTCAGTCTCTTATTAACAAAACGATTGCTGAACTGGAATCTGAGCTTAGTCGACTGGGAAAGCCTATTGCTGCTGATGCAGGAGGGAAGTTATATT CAATCATGGAGATTTGTCGGCTTTTTGATCAAATATACAAGGAGCATCTCGATGGAGTACGACCAGGTGGCGAGAAGGTATACAATGTATTCGATAATCA GCTTCCTGCTGCTATGAAGAGGTTGCAATTTGACAAGCAACTTGCAATGGAGAATATCCGTAAACTGATTACTGAAGCTGATGGATACCAACCTCACTTG ATAGCTCCAGAGCAAGGATATCGTCGTCTAATTGAATCTTCATTAATTACCATCAGAGGTCCTGCTGAGGCAGCTGTTGAAGCGGTTCACGCCATATTGA AGGAGCTTATTCACAAGGCAATCAGTGAGACTGTGGAGTTGAGGCAGTATCCAGGCCTCAGAGTAGAACTTTCAAACGCAGCTGTTGAGTCACTCGACAG AATGAAAGAAGAAAGCAAGAAAGCAACGTTGAAGCTGGTTGACATGGAATGTAGCTACCTAACTGTCGATTTTTTCAGAAAGCTCCCTCAAGACATTGAC AAGGGTGGCAACCCTACCCATTCCATCTTCGACAGATACAACGAATTATATCTTAGACGAATCGGGACTACTGTTCTTGCTTACGTGAACATGGTGTGCG CAACCCTCCGTAACTCGATCCCCAAGTCCATTGTCCATTGCCAAGTGCGCGAGGCCAAGCGAAGCCTACTCGACCATTTCTTCGCTGAGCTAGGCAAGAT GGAGCAAAAGCATCTGTCCCAATTGTTGAACGAAGACCCTGCAGTCATGGAGCGCCGTGGCGCCCTGGCGAAGAGGCTCGAGTTATACCGGTCTGCCCAG GCCGAAATCGATGCAGTTGCGTGGTCAAAGTGA
AA sequence Show only first row Show all	>Lus10003873 pacid=23144320 polypeptide=Lus10003873 locus=Lus10003873.g ID=Lus10003873.BGIv1.0 annot-version=v1.0 MDNLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLDEGSREYAEFLHLPRKRFTDF AAVRKEISDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQSDNIVQDIENMVRSFIEKPNCLILAISPANQDLATSDAIKISREVD PSGERTFGVLTKIDLMDKGTDAVDTLEGKSFRLKFPWVGVVNRSQADINKNVDMIAARRREREYFATSPEYKHLANRMGSEHLAKMLSKHLEVVIKSRIP GIQSLINKTIAELESELSRLGKPIAADAGGKLYSIMEICRLFDQIYKEHLDGVRPGGEKVYNVFDNQLPAAMKRLQFDKQLAMENIRKLITEADGYQPHL IAPEQGYRRLIESSLITIRGPAEAAVEAVHAILKELIHKAISETVELRQYPGLRVELSNAAVESLDRMKEESKKATLKLVDMECSYLTVDFFRKLPQDID KGGNPTHSIFDRYNELYLRRIGTTVLAYVNMVCATLRNSIPKSIVHCQVREAKRSLLDHFFAELGKMEQKHLSQLLNEDPAVMERRGALAKRLELYRSAQ AEIDAVAWSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	0	1
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	2.4	0.9191
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	4.0	0.9081
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	4.5	0.8942
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	4.9	0.8649
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	5.2	0.9033
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	6.7	0.8737
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	7.5	0.8745
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	7.9	0.8788
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	8.1	0.8895
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	8.5	0.8892

Compare expression of checked genes

Lus10003873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.