Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10960 616 / 0 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 606 / 0 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 587 / 0 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63180 492 / 5e-176 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G12780 491 / 1e-175 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G30620 266 / 5e-86 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G44480 263 / 8e-85 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20460 260 / 8e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 172 / 8e-52 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 91 / 6e-20 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001822 [exp] 714 / 0 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 616 / 0 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 516 / 0 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 476 / 2e-169 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 473 / 1e-166 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10038423 [exp] 259 / 1e-83 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 227 / 2e-71 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 223 / 8e-70 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10016640 [exp] 93 / 1e-20 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090700 [exp] 622 / 0 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 611 / 0 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 493 / 3e-176 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.006G022000 [exp] 253 / 2e-81 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 253 / 4e-81 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 252 / 7e-81 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 249 / 1e-79 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G320000 [exp] 87 / 7e-19 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 84 / 1e-17 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.001G383500 [exp] 84 / 2e-17 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10003875 pacid=23144344 polypeptide=Lus10003875 locus=Lus10003875.g ID=Lus10003875.BGIv1.0 annot-version=v1.0 ATGGCTAAGAACGTTCTAGTCACCGGCGGTGCCGGCTACATTGGAAGCCACACCGTCCTTCAGTTGCTCTTAGGCGGTTACAGCGCCGTCGTCGTTGACA ACCTTGACAACTCCAATCAACTCGCTCTTCACCGCGTCAAGGAACTCGCCGGCCACCACTCCAAGAAACTCTCCTTCCACCAGTTTGATCTAAGGGACAA ACCTGCTCTGGAGAAAATTTTCGCGGGGACAGAATTTGATGCTGTCATACACTTTGCTGGACTGAAAGCAGTCGGCGAGAGTGTTGAGAAGCCGTTGATG TATTACAACAACAATCTCATTGCAACCCTTACTTTGCTGGAAGTGATGGCTGCCTATGGATGCAAGAATCTTGTCTTCTCATCGTCAGCCACTGTTTACG GCTGGCCTAAGGAAGTTCCATGCACGGAAGAATTCCCCATCAATGCTGCGAATCCATATGGCCGGACCAAGCTTTTCATTGAAGATATATGTCGTGATGT CTACGCCTCGGACTCTAAATGGAGAATCATTTTGCTGAGGTATTTCAATCCTGTTGGTGCACATCAAAGTGGGAAGATTGGTGAGGATCCACGTGGGATC CCAAACAATCTCATGCCGTATGTGCAGCAAGTTGCTGTTGGAAGAAGACCTCATCTAACAATCTTCGGGAATGACTACAAAACCAAGGATGGAACTGGGG TACGTGACTATATTCATGTTGTTGATTTGGCCGATGGTCACATTGCTGCACTGCGTAAGCTCGATGAACCTAACATTGGCTGCGAGGTATACAACTTGGG AACAGGAAAGGGAACGTCAGTATTGGAGATGGTTGCAGCATTTGAGAAGGCATCCGGAAAGAAAATACCTCTAGTAATGGCTGGACGGCGACCAGGGGAT GCTGAAATGGTTTACGCATCAACAACCAAGGCAGAACGTGAATTGAATTGGAAGGCCAAATACGGAATCGAAGAAATGTGCAGGGACCAATGGAACTGGG CAAGCAAGAACCCTTATGGTTACAAGTCGTCACCTGACATCCCAAACGGAACCACCAAGTAA
AA sequence Show only first row Show all	>Lus10003875 pacid=23144344 polypeptide=Lus10003875 locus=Lus10003875.g ID=Lus10003875.BGIv1.0 annot-version=v1.0 MAKNVLVTGGAGYIGSHTVLQLLLGGYSAVVVDNLDNSNQLALHRVKELAGHHSKKLSFHQFDLRDKPALEKIFAGTEFDAVIHFAGLKAVGESVEKPLM YYNNNLIATLTLLEVMAAYGCKNLVFSSSATVYGWPKEVPCTEEFPINAANPYGRTKLFIEDICRDVYASDSKWRIILLRYFNPVGAHQSGKIGEDPRGI PNNLMPYVQQVAVGRRPHLTIFGNDYKTKDGTGVRDYIHVVDLADGHIAALRKLDEPNIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMAGRRPGD AEMVYASTTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYKSSPDIPNGTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	0	1
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	1.0	0.9341
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	2.0	0.8946
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	3.0	0.8773
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	5.7	0.8446
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	8.2	0.8376
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10003660 [exp]	8.9	0.7793
AT1G73760			RING/U-box superfamily protein...		Lus10013497 [exp]	10.1	0.8096
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	11.0	0.8083
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	11.5	0.8725
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	12.7	0.8545

Compare expression of checked genes

Lus10003875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.