Plant FIBer expression Database

Lus10003876 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64430 642 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001823
[exp]
911 / 0 AT1G64430 689 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G090800
[exp]
719 / 0 AT1G64430 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Potri.003G140800
[exp]
711 / 0 AT1G64430 690 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
PFAM info
Representative CDS sequence
>Lus10003876 pacid=23144336 polypeptide=Lus10003876 locus=Lus10003876.g ID=Lus10003876.BGIv1.0 annot-version=v1.0
ATGACTCTCAACTTAGGCTCGCCAACTCTAGCTCGCCTCCTTCAACCTGCTGCTGCTCCTCCTCAAGTGTCGAAGCTCCGGGACGCCTCTCTCCCAACCA
ACGGCTGCACTTACACTCTCCTTTCTCTCCTTCTAGCCACCGCCGCCGGCTTCAGAAATACCGCCTCTGTCGCATCTTCTAGAATCTTCAGAGCTAGAGC
CTCGCTCAGTGATGGAGCTGCTGCCGACAACTTGTTCGATGACAATGCGCTGCTCGTTCGGGTATCTGCTGCCAAACGAGCCGACGAGGCTTTGGAGATC
ATCGCCGAGGCATCCAAGCGTAGTAGCGGTGTTGTAGGTGTTTCCGATTGTTGTTCGATTATAAACGCTGCTCTTGATCGGAGCAATTCGGAGTTGGCCT
TGTCTGTATTCTATGCCATGCGTTCGAGTTTCGATCAAGCTGTTGGTGAGAATGGTGGTTCAATTCAGAGATGGAAATGGTCGAGGCCGAACGTTAGTGT
TTATACGTCGTTAGTGCGAGGACTTGCGGCATCATTGAAAGTCTCGGATGCGCTCAAAACGATTGAATACATTTGTCGAGTCGGAGTCTCTCCGAGTGAA
GAGCGTGTGATCAAACTTGGCGAGGTTTTGCAGGTGCCTTTCGGAAAGGTTATTAGGTGTCCAACTTGTTCTGTCGCTGTTGCAGTTGCACAACCACAGC
ATGGTGTACAGATTGCTTCTTGTTCAAAATGCCGCTATCAGTATGAGCTTGTGTCTGGAGACATAACTAGCATCAGCTCTGAAGAAATCAGCATGGACCT
TCCTATGTGGGAGAGGGGGCTACGGTTTCTGCAAATACTGAAGCAAAGAACTCCTGCTGCTGTTCACTCAATTGTGGTACAGACACCATCTGGTACAGCA
CGTACACAAAAGTTTGCTACTGAAACAGTCGATCTCCCAGCCCAAGAAGGAGAAAGGGTGACCATTGCTTCAGCTGCCCCATCCTACGTATACAGAAGTG
TGGGACCCTTAAAATTTACTCCAAAGGCCTCCAGCTTCTATCCCGGGGAGCCTTTGTGCCTGACTAACCATGGGAATGGTCGGGAAACACCACTGTTAAG
ACCTCCTGCAAAAGATGGGAGGCTATCCTTGCTCAGTCCTTCTGTCCTTATTCCTCTTGCGGCGGTTCTGGCAACTGGAGATGTTGCCTCGGGAATGGTC
GACCCCAGCTTACCTCAGTTACTTTCAATTGCTGCGTTTACATCTATTAGTGCTGGAGCTGCCATAAATACTCTGGTTTTGCCCCAGCTGAACCAACTTC
CTCAGAAGTCAGCTGATGCAATCTCTATTAAACAGCAACTGTTGTCTCAATATGACGTCCTTCAGTCTCGCATCAAGGACCTGAAAGAAGCTGCTGAAAA
GGAGATTTGGATGCTAGCTCGCATGTGCCAGCTGGAGAACAAAATTTTTGCTGTAGGAGAACCAGCTTATCGAGCCAGGCGAACTAGATTGAAACAAGTC
CGAGAAGGATTGGAAGATTCCCTCAAGGGACGTATTGAACTCATTGACAGCTATGCTAGAATTTCCTCAATGATTGAAATTGAGGTAGAACTGGACTCTG
ATGTTCTTGCTGCTGACGCAGTAAGCAATGTGGAAAGCATTGCTGAACAGATCCAACAGATCATGGAGCTGGAAGATCTTGAAGAGGATTACCAGTGCTA
CACCAAAAGGGGTTTCACTTTTCAGCAACTCTCAGAGCTCAAAAACTGGAAGATACTACCTGCTCCACCATGGAGATTGCGCTGCATCAGCTGCTGA
AA sequence
>Lus10003876 pacid=23144336 polypeptide=Lus10003876 locus=Lus10003876.g ID=Lus10003876.BGIv1.0 annot-version=v1.0
MTLNLGSPTLARLLQPAAAPPQVSKLRDASLPTNGCTYTLLSLLLATAAGFRNTASVASSRIFRARASLSDGAAADNLFDDNALLVRVSAAKRADEALEI
IAEASKRSSGVVGVSDCCSIINAALDRSNSELALSVFYAMRSSFDQAVGENGGSIQRWKWSRPNVSVYTSLVRGLAASLKVSDALKTIEYICRVGVSPSE
ERVIKLGEVLQVPFGKVIRCPTCSVAVAVAQPQHGVQIASCSKCRYQYELVSGDITSISSEEISMDLPMWERGLRFLQILKQRTPAAVHSIVVQTPSGTA
RTQKFATETVDLPAQEGERVTIASAAPSYVYRSVGPLKFTPKASSFYPGEPLCLTNHGNGRETPLLRPPAKDGRLSLLSPSVLIPLAAVLATGDVASGMV
DPSLPQLLSIAAFTSISAGAAINTLVLPQLNQLPQKSADAISIKQQLLSQYDVLQSRIKDLKEAAEKEIWMLARMCQLENKIFAVGEPAYRARRTRLKQV
REGLEDSLKGRIELIDSYARISSMIEIEVELDSDVLAADAVSNVESIAEQIQQIMELEDLEEDYQCYTKRGFTFQQLSELKNWKILPAPPWRLRCISC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64430 Pentatricopeptide repeat (PPR)... Lus10003876
[exp]
0 1
AT1G64430 Pentatricopeptide repeat (PPR)... Lus10001823
[exp]
1.0 0.9610
AT1G71810 Protein kinase superfamily pro... Lus10017924
[exp]
1.7 0.9324
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Lus10001839
[exp]
2.4 0.9353
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Lus10019083
[exp]
5.3 0.9161
AT5G40640 unknown protein Lus10014575
[exp]
5.7 0.8915
AT4G10000 Thioredoxin family protein (.1... Lus10009466
[exp]
5.7 0.8776
AT5G39980 Tetratricopeptide repeat (TPR)... Lus10041429
[exp]
6.2 0.8958
AT5G02830 Tetratricopeptide repeat (TPR)... Lus10015053
[exp]
6.3 0.9306
AT1G03160 FZL FZO-like (.1.2) Lus10000656
[exp]
6.7 0.9055
AT2G13600 Pentatricopeptide repeat (PPR)... Lus10022368
[exp]
7.1 0.8910

Lus10003876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.