Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23250 190 / 1e-59 Succinyl-CoA ligase, alpha subunit (.1.2) AT5G08300 186 / 8e-58 Succinyl-CoA ligase, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017389 [exp] 204 / 1e-64 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 200 / 5e-63 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 195 / 5e-61 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10028767 [exp] 120 / 1e-35 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10010185 [exp] 119 / 8e-33 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10010186 [exp] 83 / 2e-20 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 81 / 8e-18 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 68 / 7e-14 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10006405 [exp] 0 / 1 AT5G08300 80 / 2e-17 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036200 [exp] 192 / 5e-60 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 188 / 1e-58 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.005G091400 [exp] 186 / 9e-58 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain
Representative CDS sequence Show only first row Show all	>Lus10003877 pacid=23144338 polypeptide=Lus10003877 locus=Lus10003877.g ID=Lus10003877.BGIv1.0 annot-version=v1.0 ATGGAAATTGGAAACCCACGCTCGAGTGCATTTCACGCACACGCGCCAACGTGTTCTGTACGCGCCGACCTGCTGTTTTCCCTCTTTTCGTTGTTTTCTC CCGATTCCGTTTTCTCGCCGACTATTGAATCCGTTTCCCGATTCCGTCTTCTCGTCAAGCCACCAGACTCGTGGCCTCTTTGTCTTCCAAGCTTCGGTCT CCAACTCCCCAGATCACCCCCCTCCTCTTCCTCCCAAACTTTATTGCAATCGTGGTCCTTTGCCTCGGCTCCGCCGTTGCCCCTACGGTGTTCGTCAACA AGAACACACGCGTCGTTTTCCAGGGAATCACCGGCAAGAACGGGATTTTTCGACACCGAACAAGCCATTGACTATGGCGCCAAGATGGTTGGAGGGGTGA CACCTAAAAAGGGTGGCACGGAGCACTTGGGCCTTCCTGTGTTCAACTCCGTGGCGGAAGCAAAGGCTGAAACGAAAGCTAACGCATCAGTACGGGTGAA GGCTGCCCTGAACCAGCAATCGAAAACGAGATTAATTGGTCCAAATTGCCCTGGGATTATCAAACCTGGGGAATGCAAGATCGGAATCATGCCTGGATAC ATCCACAAACCAGGGCGTATTGGAATTGTTTCACGGTCTGGCACATTGACTTACGAGGCTGTGAGTGCTGATCGCTTTGTAGAGTTCTTAATGTTCTTAG TTTAA
AA sequence Show only first row Show all	>Lus10003877 pacid=23144338 polypeptide=Lus10003877 locus=Lus10003877.g ID=Lus10003877.BGIv1.0 annot-version=v1.0 MEIGNPRSSAFHAHAPTCSVRADLLFSLFSLFSPDSVFSPTIESVSRFRLLVKPPDSWPLCLPSFGLQLPRSPPSSSSQTLLQSWSFASAPPLPLRCSST RTHASFSRESPARTGFFDTEQAIDYGAKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVRVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGY IHKPGRIGIVSRSGTLTYEAVSADRFVEFLMFLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10003877 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	10.7	0.7597
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	19.1	0.7591
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10004932 [exp]	32.4	0.7045
AT5G65540			unknown protein		Lus10035950 [exp]	111.9	0.6715
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	214.4	0.6460
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	243.6	0.6415

Compare expression of checked genes

Lus10003877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.