Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23900 336 / 1e-117 Nucleoside diphosphate kinase family protein (.1) AT4G11010 331 / 2e-115 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23895 336 / 3e-114 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT4G09320 189 / 2e-60 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT5G63310 184 / 8e-58 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT1G17410 89 / 1e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001824 [exp] 407 / 2e-145 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 329 / 3e-115 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10023076 [exp] 208 / 3e-66 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1) Lus10024286 [exp] 190 / 3e-61 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 186 / 2e-59 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10017931 [exp] 186 / 1e-58 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10014787 [exp] 186 / 1e-58 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091001 [exp] 355 / 3e-125 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 343 / 2e-120 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 197 / 4e-64 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 196 / 3e-62 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.002G138800 [exp] 192 / 4e-62 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 76 / 9e-17 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10003878 pacid=23144318 polypeptide=Lus10003878 locus=Lus10003878.g ID=Lus10003878.BGIv1.0 annot-version=v1.0 ATGAGCTCTCACATTTTCAGATCTGCTTCCAGAGCCGCCAGGTCCCTCCTCTCCTCTGCTTCCAAGGGCTCTCGCTTTTACTCCGGGGGACGAGCGGCTG CTGTTCTGTCGAGTGGAAGAAAGCTGCCACTCTTTGCTTCGGCCTATGATAACACCAGTTCATCAAATGTTCCTCAATGGATCTCTGGAGCCCTTGCGAT TCCCATGGCAGATCCAGATTTCCTGTTTGAATCCCTTATTGAAATGCAATCTTTTGAATCCTGTTTGAATTATCGTGATATATGTCCAGCTTACATGCTC CAAGAACAGGAGGCTCGTGCTGGAGAGCTTGAGCGCACTTTCATTGCTATCAAGCCCGACGGTGTGCAGAGAGGATTGGTTTCAGAAATCATTTCCCGTT TCGAGCGCAAAGGTTTCAAGCTTGTGGCGATCAAGATAGTGGTTCCTTCAAAGGACTTCGCTCAAAAGCACTATCATGACCTGAAAGAGAGACCATTTTT CAATGGCCTGTGCAACTTCCTTAGCTCTGGTCCTGTTGTGGCCATGGTCTGGGAAGGAGAAGGGGCGATCAAATACGGCAGGAAGCTGATTGGAGCGACC GATCCCCAGAAATCCGAACCCGGAACCATTCGAGGTGATCTGGCCGTGGTTGTTGGAAGGAACATCATTCATGGAAGTGACGGCCCAGAAACCGCCAAGG ACGAGATCAAGTTGTGGTTCAAGCCAGAAGAACTGGTTAACTACACAAGCAATGCTGAGAAATGGATATACGGAAACAACTGA
AA sequence Show only first row Show all	>Lus10003878 pacid=23144318 polypeptide=Lus10003878 locus=Lus10003878.g ID=Lus10003878.BGIv1.0 annot-version=v1.0 MSSHIFRSASRAARSLLSSASKGSRFYSGGRAAAVLSSGRKLPLFASAYDNTSSSNVPQWISGALAIPMADPDFLFESLIEMQSFESCLNYRDICPAYML QEQEARAGELERTFIAIKPDGVQRGLVSEIISRFERKGFKLVAIKIVVPSKDFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGAIKYGRKLIGAT DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTSNAEKWIYGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	0	1
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	2.2	0.8405
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	4.9	0.8289
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	4.9	0.8243
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	7.4	0.8258
AT3G57400			unknown protein		Lus10042067 [exp]	9.4	0.8098
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10024234 [exp]	9.9	0.8304
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	10.4	0.8090
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	10.5	0.7365
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	10.6	0.8261
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	10.8	0.7948

Compare expression of checked genes

Lus10003878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.