Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001825 [exp] 270 / 1e-91 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003879 pacid=23144332 polypeptide=Lus10003879 locus=Lus10003879.g ID=Lus10003879.BGIv1.0 annot-version=v1.0 ATGAACACTGATAAGCAATCAGCTACATCCACTGATGAACATGTCATCCCTGCAACTGCTTCTGATGGTGATGCTGCTGCTGCTGGTGGTGATGCTGGCA ATGAAGTCCCTCATCCCACAGTTGTTGAAGATCTTTCTCCTCCGTCAATTGGCATCAGATCTGCCCCTGCCGCTGATGCTAAAGGCAAAGGCAAAGCTGT GCAGGGAGAGGGTGCGGGAAACGAGGAAAATGAAACAGATGTTAATAATGCTGGTGCTGAAATGGAGCCGGAAGGGGATTCCGAGCCGTGGACGTTGAAC ACGGTGTTACTTTCGGCAATACCATCAGTCATGAGGAGGAAGCTGCTGAAAGGAGTCCCGCCTCCATGCGTGGTGTGCCAGGAGGTTTTCCAAACATTCA CAGCGCTCATCCACCACTTGCATACCCATGGAGAGGACATCTTTCGACGGGTCACCGTCACTTATGATATCCGCGCAATTGCGCCCATCACCGAGCGAAG ACACAATGGGGAAGCTTCCGAAAATGTGGCACTCACTAGTAATAATGAGGAAGACGCCCAAAATAAGACACTCAGCAACGATAAGGAGGGAACCGCTGGA AATGAGACGCTCACAGGTGCACCGGCTGGCCCTTCTCTCAAACGGGACAACATGGATCTCGATTTCGACCTCAATCTCCTTCCGTCTGAAGCTCAAGAAG ATTGA
AA sequence Show only first row Show all	>Lus10003879 pacid=23144332 polypeptide=Lus10003879 locus=Lus10003879.g ID=Lus10003879.BGIv1.0 annot-version=v1.0 MNTDKQSATSTDEHVIPATASDGDAAAAGGDAGNEVPHPTVVEDLSPPSIGIRSAPAADAKGKGKAVQGEGAGNEENETDVNNAGAEMEPEGDSEPWTLN TVLLSAIPSVMRRKLLKGVPPPCVVCQEVFQTFTALIHHLHTHGEDIFRRVTVTYDIRAIAPITERRHNGEASENVALTSNNEEDAQNKTLSNDKEGTAG NETLTGAPAGPSLKRDNMDLDFDLNLLPSEAQED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003879 [exp]	0	1
					Lus10041944 [exp]	3.6	0.8972
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	3.9	0.8895
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	4.0	0.8932
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	7.7	0.8571
					Lus10000650 [exp]	8.5	0.8796
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10010491 [exp]	11.2	0.8549
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	16.2	0.8225
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	16.2	0.8624
					Lus10018627 [exp]	17.2	0.8613
					Lus10025164 [exp]	21.3	0.8560

Compare expression of checked genes

Lus10003879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.