Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23890 194 / 9e-62 NdhS, CRR31 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001826 [exp] 366 / 1e-129 AT4G23890 252 / 9e-85 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091300 [exp] 219 / 4e-72 AT4G23890 211 / 6e-69 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein Potri.003G140400 [exp] 219 / 5e-72 AT4G23890 224 / 1e-73 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF11623 [flax] [poplar] NdhS NAD(P)H dehydrogenase subunit S
Representative CDS sequence Show only first row Show all	>Lus10003880 pacid=23144311 polypeptide=Lus10003880 locus=Lus10003880.g ID=Lus10003880.BGIv1.0 annot-version=v1.0 ATGGCATCATCTTCAATCACTCTCCAAACCCTCCATCTCAGATCCAACTTCCCAGGCAAAACAACTCCCAGCATAAAACCCTCCTACTCGTCTTTGGTTC CTAGAGATTCAAGACTAAAACATATCAAAACATACGCCAAGTTCAACCTCTCGGAGCTCCTGGGTGGGAGAGGACTCTGCAACGGAGAGGAAGGCCTAGA GAAACTGCTTAAAGAACCACCTTCACCAGCTGCACCAGCAGCTGAAGGAGGAGAAGAAGAAGCAAGTTCCGGCAGCCAGTTACCGGCGGCGGCAACGGAA GCTGTCCCGGAAGATGCATTTGACAAGGAACTAATGGGACTCACAGGGGGGTTTCCTGGTGGGGAAAAGGGACTGCAGAAGTTTATTGAGGAGAACCCAC CACCAAGCAAGACAGACTCAGAAGAAGCTCTATCTATAACAGCAAAGAAGAAGCCTAAAGCACCCCAACTGCCACTCCTGATGCCTGGTATGATTGCTGT GGTTAAAGACCCAAACAATCCATACTATATGTACTGTGGCATCATACAAAGGATCACAGATGGGAAAGCTGGGCTTCTTTTGGAAGGAGGTGTCTGGGAT CGGTTGATCACTTTCAGGCTCGAAGAACTCGAGCGCAGGGAGAAAGGTCCTCCGGGGAAAAATCCCCGGTCTGTTATTCTAGAGCAAAAGCTTGAGAAAA AAGATTCACAGTCTGGTTGA
AA sequence Show only first row Show all	>Lus10003880 pacid=23144311 polypeptide=Lus10003880 locus=Lus10003880.g ID=Lus10003880.BGIv1.0 annot-version=v1.0 MASSSITLQTLHLRSNFPGKTTPSIKPSYSSLVPRDSRLKHIKTYAKFNLSELLGGRGLCNGEEGLEKLLKEPPSPAAPAAEGGEEEASSGSQLPAAATE AVPEDAFDKELMGLTGGFPGGEKGLQKFIEENPPPSKTDSEEALSITAKKKPKAPQLPLLMPGMIAVVKDPNNPYYMYCGIIQRITDGKAGLLLEGGVWD RLITFRLEELERREKGPPGKNPRSVILEQKLEKKDSQSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10003880 [exp]	0	1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	5.2	0.8235
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	13.2	0.8180
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	17.1	0.8278
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	21.2	0.7851
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	22.2	0.8272
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	22.9	0.8227
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	27.7	0.7669
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	31.1	0.8136
					Lus10018772 [exp]	34.6	0.8225
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	40.1	0.7622

Compare expression of checked genes

Lus10003880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.