Plant FIBer expression Database

Lus10003881 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23885 74 / 2e-18 unknown protein
AT5G24165 60 / 8e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001827
[exp]
147 / 4e-47 AT4G23885 86 / 6e-24 unknown protein
Lus10014921
[exp]
68 / 1e-15 AT5G24165 80 / 2e-21 unknown protein
Lus10038814
[exp]
67 / 9e-14 AT5G38250 165 / 2e-46 Protein kinase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G140300
[exp]
95 / 2e-26 AT4G23885 85 / 2e-23 unknown protein
Potri.012G011600
[exp]
59 / 3e-12 AT5G24165 89 / 4e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10003881 pacid=23144319 polypeptide=Lus10003881 locus=Lus10003881.g ID=Lus10003881.BGIv1.0 annot-version=v1.0
ATGGCAGGAGTAGCGCAGGCGTTGAAGCGAATCCCTCGCATCAAATTTCCCCAGCGCCATCTCAATCGTTCCTCAGGCTCCAACACAGAAGAAGCTTCTA
ATGCGGGAACTGGCAGCTCAAGTTTCTTCTCCATTGCCAATGCTTCGAAATCGGTCGGAGGTCAAGCTTCTCTCCAGCCCAAACGATCGCCAGTTTCTAA
TGATGAGATCCAGGCAATCTTGGTACGTTCAAAAAGATCATCTTTGGTTTTCATCTCTGGTTTTTGTTCAATCTTTCATGATAATTATCATTGTGCAATA
CCAAATCTAGTGAGAATTCATAATGGGGGCACTCTTTATCTGGCAGTTGGGCGGTTGCATCTGATCTCCTACACAGAAGTTCCAGTAGCCGATGGTGGGT
CTTTTCTAATTGATCATCCCTGA
AA sequence
>Lus10003881 pacid=23144319 polypeptide=Lus10003881 locus=Lus10003881.g ID=Lus10003881.BGIv1.0 annot-version=v1.0
MAGVAQALKRIPRIKFPQRHLNRSSGSNTEEASNAGTGSSSFFSIANASKSVGGQASLQPKRSPVSNDEIQAILVRSKRSSLVFISGFCSIFHDNYHCAI
PNLVRIHNGGTLYLAVGRLHLISYTEVPVADGGSFLIDHP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G23885 unknown protein Lus10003881
[exp]
0 1
AT4G24820 26S proteasome, regulatory sub... Lus10014789
[exp]
14.3 0.6873
AT5G16880 Target of Myb protein 1 (.1.2.... Lus10039144
[exp]
15.0 0.7413
AT3G13170 ATSPO11-1 Spo11/DNA topoisomerase VI, su... Lus10004416
[exp]
22.2 0.6820
AT2G37690 phosphoribosylaminoimidazole c... Lus10005526
[exp]
22.7 0.6937
AT2G01905 CYCJ18 cyclin J18 (.1) Lus10031940
[exp]
30.3 0.6852
AT3G13170 ATSPO11-1 Spo11/DNA topoisomerase VI, su... Lus10016612
[exp]
30.8 0.6956
AT2G15730 P-loop containing nucleoside t... Lus10042667
[exp]
38.2 0.6645
AT3G27470 Protein of unknown function (D... Lus10003659
[exp]
42.7 0.6166
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Lus10008544
[exp]
46.2 0.6737
AT3G12530 PSF2 PSF2 (.1.2) Lus10000955
[exp]
48.0 0.6543

Lus10003881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.