Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039265 [exp] 146 / 7e-40 AT5G52510 503 / 1e-170 SCARECROW-like 8 (.1) Lus10007762 [exp] 78 / 2e-18 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142400 [exp] 43 / 0.0001 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 42 / 0.0004 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003885 pacid=23144312 polypeptide=Lus10003885 locus=Lus10003885.g ID=Lus10003885.BGIv1.0 annot-version=v1.0 ATGGCACATGGATTCCCCGACGGAGGAGGAGGATTCTGCGGGGGCGGTGGTGGTTCAGACTCCTACTCCGCCGGCAGATCGATGAACTTCTCCTCATGCA ACCCTAACAACAACACCACACAGCTTCCTTACAGAACTCAGCAACAGCTCCCGCAAATCTTCCTCGGCCAATCTTCACAGATCGGCCACCATCGGAACCA CCACCACCACCTCCTCCAACAACAACAACAACAGCAACAGTCTCCCGCAAGCAGCTACATGGGGAAAAGAGCCCTCTCCGATTTCCAGGGGATAAATCCA GCCTTGAATTCGTTACTCCTCCGATCAGTGAAGCCGAGGATTTACCAGAATAATTGCAGTGATTTCTCTGGTAGTTTCGCTAATAATAATAATAATTTCT CTGCGGAGAATTCATTTTCCGCTCTTTCTTCTCAGCGTCTCCGGCGAGCAGCTACATGGGGGAAAGGAGCTATCTCTGATTGCTGCTCCTTCAGCAGCTC AGGACTCAGCCTATCAATGTTCCGTTTGCGCAAATCCGGACTCGGAACAATGAAGGAGTTGCCGTCCGGGTCCGTCGGGTCAGGTGGACCAGATCAGGAA CCAGAGAAGAAAATAATGAACCAGCTTCGGGAGCTGAAGAAGCAGCTTCTGGATGACGACGACGAGGAGGTAGAAGGGGAAGAAGGACAATCTGATGCCG TTTCAGTCATCAAACCAACTGGGCTGCAAATCAGGCCGCTGTTCGAAACTGACTAG
AA sequence Show only first row Show all	>Lus10003885 pacid=23144312 polypeptide=Lus10003885 locus=Lus10003885.g ID=Lus10003885.BGIv1.0 annot-version=v1.0 MAHGFPDGGGGFCGGGGGSDSYSAGRSMNFSSCNPNNNTTQLPYRTQQQLPQIFLGQSSQIGHHRNHHHHLLQQQQQQQQSPASSYMGKRALSDFQGINP ALNSLLLRSVKPRIYQNNCSDFSGSFANNNNNFSAENSFSALSSQRLRRAATWGKGAISDCCSFSSSGLSLSMFRLRKSGLGTMKELPSGSVGSGGPDQE PEKKIMNQLRELKKQLLDDDDEEVEGEEGQSDAVSVIKPTGLQIRPLFETD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003885 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	14.9	0.6176
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	23.2	0.5961
					Lus10010327 [exp]	34.6	0.5580
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	73.2	0.5484
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	99.9	0.5241
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033389 [exp]	131.0	0.4613
AT1G05675			UDP-Glycosyltransferase superf...		Lus10024117 [exp]	193.2	0.4891

Compare expression of checked genes

Lus10003885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.