Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23840 257 / 2e-80 Leucine-rich repeat (LRR) family protein (.1) AT1G15740 60 / 1e-09 Leucine-rich repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001831 [exp] 527 / 0 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10008036 [exp] 67 / 8e-12 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10025751 [exp] 63 / 2e-10 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10038107 [exp] 59 / 3e-09 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10035912 [exp] 49 / 5e-06 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092000 [exp] 357 / 5e-119 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.006G061700 [exp] 65 / 3e-11 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.005G009700 [exp] 44 / 0.0001 AT1G74190 453 / 4e-141 receptor like protein 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003886 pacid=23144331 polypeptide=Lus10003886 locus=Lus10003886.g ID=Lus10003886.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAGCGACGGACGCTCGAGGGTATGCCTTCTGTTCTTGCCGACGCTCTCTAAACCCCCGCTTCCTCCTCTTCCCTTCCTTACTCGAAGTTT TCAAAAACAGCGTGGAGAGTGTTGATCTCAGAGGTGAGAACACTGTGTATGCAGAGTGGATGGCATATATCGGAGCTTTCCGTTACTTGCACTCCTTGAA CCTTGCTGACTGTATGACTAGATTAAAGGAGGTTGACGTTTCTAGATGTGTGAAGGTTACAGATGCTGGCATTCGGCATCTTGTTTCCATTTCAACGTTG GAAGTACTAAGGCTTTCAAGAACTAGCTTAACTGAACAGGGAATCATGATGCTCTCTGCCCTTGGAGAGTTGTTAGTTCTAGACTTGCGTGATTTACCTG TCACTGATAGAGCATTGGCTTCTCTCCAGGCACTCTCGAAGCTAGAGTATCTTGACCTCTGGGGAACTGAGCTATCTCAATCTGGCGTGGACGGGTGTAA ATCATTCCCAAACATGTCATCTATTGGGTGCTTAAACTTAAGCAACTGCACTATTGACTCTGCCCTTGAGAATGACGGTAAGAGAACTCCTCTTACCAAA CTTATTTTGGCTGGAGCGACGATAAGCAACGAGGCTGGGATTTTCTCGTTGATTGAATCAAGCTCCATTTCATATCTGGACATCTCCAATTCAAGTCTCA CCGACTTCAGCTTTCTGTCCGAAATGAGTGCTCTTCAACACTTGGATCTGAGCTCTAGCATGGTAGGCGATGATTCAATCAAGTGGGTATGTTGTATAGG AGCGAGCTTGAGAAATCTGAACCTCAGCAGAACACGTGTCACCTCTGGTGGAATATCAACCTTAGCTCCACATGTTCCCCAACTTGAAGTGTTGTCACTG TCTCACGCTTCAATAGATGACATTTCCATCACATCCAATGGCACCATGACATCTCTCAAGGCGCTTGACCTAAGCAACACAAAGATAAAAGGTTTCATTC GCCAAGGAGGAGCTGAGGGAGATGACGTCACCTCCCTGACAAATCTTGTCGGCGTAAAGAATTTGGAAAGCCTGAAACTAGAGCACACCTAG
AA sequence Show only first row Show all	>Lus10003886 pacid=23144331 polypeptide=Lus10003886 locus=Lus10003886.g ID=Lus10003886.BGIv1.0 annot-version=v1.0 MEEAATDARGYAFCSCRRSLNPRFLLFPSLLEVFKNSVESVDLRGENTVYAEWMAYIGAFRYLHSLNLADCMTRLKEVDVSRCVKVTDAGIRHLVSISTL EVLRLSRTSLTEQGIMMLSALGELLVLDLRDLPVTDRALASLQALSKLEYLDLWGTELSQSGVDGCKSFPNMSSIGCLNLSNCTIDSALENDGKRTPLTK LILAGATISNEAGIFSLIESSSISYLDISNSSLTDFSFLSEMSALQHLDLSSSMVGDDSIKWVCCIGASLRNLNLSRTRVTSGGISTLAPHVPQLEVLSL SHASIDDISITSNGTMTSLKALDLSNTKIKGFIRQGGAEGDDVTSLTNLVGVKNLESLKLEHT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	0	1
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	1.0	0.9093
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	1.7	0.8794
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	2.0	0.9017
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	2.8	0.8793
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	3.0	0.8364
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	3.2	0.8791
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	4.0	0.8379
					Lus10007551 [exp]	4.7	0.8028
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	7.2	0.7822
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	8.9	0.8029

Compare expression of checked genes

Lus10003886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.