Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07430 119 / 1e-29 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 117 / 3e-29 HAI3 highly ABA-induced PP2C gene 3 (.1) AT4G26080 114 / 4e-28 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT3G11410 114 / 5e-28 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G57050 107 / 8e-26 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT5G59220 107 / 1e-25 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT1G72770 98 / 5e-22 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT5G51760 96 / 9e-22 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G17550 93 / 3e-20 HAB2 homology to ABI2 (.1) AT1G67820 72 / 2e-13 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001832 [exp] 560 / 0 AT2G29380 108 / 7e-26 highly ABA-induced PP2C gene 3 (.1) Lus10033955 [exp] 206 / 2e-63 AT1G07430 154 / 4e-43 highly ABA-induced PP2C gene 2 (.1) Lus10032378 [exp] 216 / 1e-62 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10019017 [exp] 112 / 2e-27 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 106 / 5e-26 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 107 / 2e-25 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10040738 [exp] 107 / 4e-25 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10012962 [exp] 104 / 2e-24 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10004703 [exp] 104 / 2e-24 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092100 [exp] 175 / 6e-51 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 131 / 1e-34 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.015G018800 [exp] 130 / 3e-34 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 116 / 5e-29 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.008G059200 [exp] 116 / 7e-29 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 107 / 2e-25 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 106 / 2e-25 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.001G245200 [exp] 103 / 3e-24 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.012G131800 [exp] 97 / 4e-22 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 96 / 2e-21 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10003887 pacid=23144337 polypeptide=Lus10003887 locus=Lus10003887.g ID=Lus10003887.BGIv1.0 annot-version=v1.0 ATGATTTCTTCACCAATTGATTTGGCGAAGAAGAAAAACAATGTTCGAATTCGGCCAGGGCATACTTCCCTCGGACTGATGCCAAATATGAAGAAAATGA GACGGGTCAGCTATTGCCTTGATTCTGAAGCCGAATCTGGCGGCGGATTAAACGAGAAACCAGCCACCGTCGATTTGGAGCCCAATCTTCCGGTCGAAAC TCCAAACGAACCGATTCTAGGAGAATCGTCGATTGGAGCAGCGACCTGCCCCAGCAGGACATCAGCGAGTCTCTGTCACGGTGTTGTATCTGTGATCGGC AGGCGTAGGGTGATGGAAGATGCTGTTGCGGTGGTTCAAGGACTCGAGGTCGGAGGATTCGAGAATTATGCAGATTTCTTCGGCGTCTACGACGGCCAGG ACAGTGGTGGAGCAGTCTCGGTGATATGCAGAAATAGGATGCACCTGATGGTGGCGATGGAGGCAGAGAAGCGAAGTTCCGGTTCTGGGGAATCCACCAA GGGATTGGAATACTGGAAGAAGGTAATGATGAACAGTTTCCAGAAGATGGACGAGGAGATCCGTTCAGGTTACACGCCAGAGGACGACGACGTCGGGAAG AGAGCCGGCGACGGGAGGGCGAGTGCGGCTGTGGTAATGGTAAGTAAGGAGGAGGTCGTGGTGGCTAATCGGGGAAATTCGAGAGCGGTTTTATACCGGG GAGGTGTAGCAATGCCTTTATGCAGTGACCTCATCGACAAAGTAAAGCCTCTGACCATCCAGCTTGAAACACATTCTTCTTCTAGAGAATTTAAGAACAT TGTAACACAGCCGGATAGGGGAGGCGAGGAACGAGAGGCTGCCGGCCACATGGGAACAATTTTGAAAGTCAGCCGCGGCTTAGGAGGAGTACGTCCTGCT GCTACTATTACAGAAGATGGGGTGGTGCCGGAGGTAACAGTGACCGAGCGGAGTGAATGGGACGATTTTCTGGTGATAGCATCAGACGGGTTGTGGGATG TGATATCAAACGAGATAGCGTGTGCAGTGGTGGGGAAATGTTTGAACGGCGGAGTAAGGATGAAATTTGCCGACGAGACCAGCGAGAACTGTGCAGCGGC CACAGCATCGTTTCTGGCTGAATTCGCAATGGCTAAAGGGAGCCTAGACAATATCAGCGTCATTGTTGTCAAGTTGTAG
AA sequence Show only first row Show all	>Lus10003887 pacid=23144337 polypeptide=Lus10003887 locus=Lus10003887.g ID=Lus10003887.BGIv1.0 annot-version=v1.0 MISSPIDLAKKKNNVRIRPGHTSLGLMPNMKKMRRVSYCLDSEAESGGGLNEKPATVDLEPNLPVETPNEPILGESSIGAATCPSRTSASLCHGVVSVIG RRRVMEDAVAVVQGLEVGGFENYADFFGVYDGQDSGGAVSVICRNRMHLMVAMEAEKRSSGSGESTKGLEYWKKVMMNSFQKMDEEIRSGYTPEDDDVGK RAGDGRASAAVVMVSKEEVVVANRGNSRAVLYRGGVAMPLCSDLIDKVKPLTIQLETHSSSREFKNIVTQPDRGGEEREAAGHMGTILKVSRGLGGVRPA ATITEDGVVPEVTVTERSEWDDFLVIASDGLWDVISNEIACAVVGKCLNGGVRMKFADETSENCAAATASFLAEFAMAKGSLDNISVIVVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	0	1
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	1.0	0.9399
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	1.4	0.8843
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10018356 [exp]	1.7	0.8583
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	4.0	0.8208
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	4.6	0.7688
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	9.2	0.8041
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	9.2	0.7762
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	10.7	0.8140
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	11.0	0.7884
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	12.0	0.7607

Compare expression of checked genes

Lus10003887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.