Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64390 955 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 931 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 604 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 585 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 499 / 3e-172 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 497 / 1e-171 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44570 481 / 2e-165 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT1G70710 478 / 4e-164 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT2G44560 478 / 4e-164 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT4G02290 473 / 7e-162 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001833 [exp] 1180 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 1083 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 845 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 619 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 589 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10035316 [exp] 581 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 570 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 502 / 3e-173 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 473 / 5e-162 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092200 [exp] 1019 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 1003 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 610 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 606 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G356000 [exp] 597 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.010G109200 [exp] 482 / 2e-165 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.014G126900 [exp] 479 / 2e-164 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 479 / 3e-164 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 479 / 4e-164 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 464 / 1e-158 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0203 [flax] [poplar] CBD PF09478 [flax] [poplar] CBM49 Carbohydrate binding domain CBM49 CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10003888 pacid=23144310 polypeptide=Lus10003888 locus=Lus10003888.g ID=Lus10003888.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCATCCCTGTTTCTTCTGTTCATACTGATCTCATTTCAGTACGCTTTCGCCGGCCATGACTATGGCCAAGCTCTCAGCAAGAGCATTCTCT TCTTCGAAGCTCAAAGGTCTGGATTCCTTCCCCATAACCAACGGGTCACCTGGAGATCCAATTCAGGCCTCGCCGACGGCAAAGCTAGTGGGGTGGATCT GACCGGAGGATACTATGACGCCGGCGACAATGTGAAGTTCGGACTTCCAATGGCTTTCACCGTCACGATGATGTCTTGGAGCATTATCGAGTACGGCAAG CAAATGGCTGCCAGCGGTGAGCTCCGTAACGCCATGGAAGCTATCAAATGGGGGACTGATTATTTCATCAAAGCCCATCCAGAGCCTGATGTTCTCTACG GCGAGGTAGGCGACGGAACCACTGATCACTACTGTTGGCAAAGGCCGGAGGATATGACGACTGACCGCCGTGCTTACAGGATCGACCCAAGTAATCCGGG ATCTGATCTCGCCGGAGAGACGGCTGCCGCCATGGCAGCTGCCTCCGTCGTATTCCGCCACTCTGACCCGGCATACTCTTCCGAGCTTCTCAATCACGCA TATCAGCTGTTCGATTTTGCAAACAAGCACAGAGGCAAGTACGACAGCAGCATCACCGTCGCCCAGAAATACTACCGCTCCATCAGTGGCTACAATGATG AGTTGCTATGGGCTGCAGCTTGGCTCTACCAAGCATCCAGCAACGAATACTACTTGAACTACCTAGCATCCAATGGGGACTCATTGGGTGGAACCGGCTG GGCCATGACTGAGTTCGGTTGGGATGTCAAATACGCCGGTGTACAGACACTAGTATCCAAGATTTTGATGCAGGGGAGAGGTGGCCGCCATGCCCCGATC TTCGAGAAGTACCAGCAGAAGGCGGAATACTTCATGTGTTCATGCCTTGGGAAAGAAGGTAGGAGCATTCAGAAAACTCCAGGTGGTTTGATTTTCAGGC AGAGGTGGAACAATATGCAGTTTGTCACCAGTGCCTCATTCCTCGCCACTGTTTACTCCGATTACCTCTCTTCCGCCCGCAAGAACCTCCACTGTTCTTC TGCTGCCGTCTTTCCTTCTGACCTCCTCGCATTCGCCAAGTCTCAGGTTGATTACATTCTTGGGGACAATCCTAGAGCAACAAGCTACATGGTGGGATAT GGGAACAACTACCCGCAACAAGTCCACCATAGGGCATCTTCCATTGTTTCGTACAAGAAGGATCCCAGCCCCATCAGCTGCCGTGGAGGCTATGCTACTT GTTCCAGCGGAAAAGCAAGCGACCCTAATCTCCTCACTGGTGCAATCGTTGGTGGACCGGACGCTTATGACAATTTCGCCGACCAAAGAGACAACTATGA GCAGACTGAGCCTGCTACCTACAACAATGCTCCCCTTGTCGGTATCCTGGCTCGTCTTAATGCCGGCCATAGTGGTTACAACCAGCTTCTTCCAGAAGCT GTTCTTCCGGCTCCTGCCCAGAAGGTGGAAACCCCAAAAGCCACAGTTATCCCTGCTCCTGAAGCAGCCTCAACTTCTGCACCTATTGCAATCAAGCAAA AGATGACAGCTTCATGGAGCCATCAAGGCGAAACCTACTATAGATACTCTACAATTGTGACTAACAACTCACCAAAGGCAGTTAACAATCTCAAGCTTTA CATTAACAAGCTATACGGTCCAGTCTGGGGTGTGACAAAATCCGGAGACTCTTATGGTTTCCCAGCATGGATCAAGTCGTTGGCAGCTGGGAAAAGTATC GAGTTTGTCTACATTCATACTGCTCCGGCTGCAGATGTCTCTGTTTCAAGCTACACTTTGGCGTAA
AA sequence Show only first row Show all	>Lus10003888 pacid=23144310 polypeptide=Lus10003888 locus=Lus10003888.g ID=Lus10003888.BGIv1.0 annot-version=v1.0 MAAASLFLLFILISFQYAFAGHDYGQALSKSILFFEAQRSGFLPHNQRVTWRSNSGLADGKASGVDLTGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGK QMAASGELRNAMEAIKWGTDYFIKAHPEPDVLYGEVGDGTTDHYCWQRPEDMTTDRRAYRIDPSNPGSDLAGETAAAMAAASVVFRHSDPAYSSELLNHA YQLFDFANKHRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASSNEYYLNYLASNGDSLGGTGWAMTEFGWDVKYAGVQTLVSKILMQGRGGRHAPI FEKYQQKAEYFMCSCLGKEGRSIQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLSSARKNLHCSSAAVFPSDLLAFAKSQVDYILGDNPRATSYMVGY GNNYPQQVHHRASSIVSYKKDPSPISCRGGYATCSSGKASDPNLLTGAIVGGPDAYDNFADQRDNYEQTEPATYNNAPLVGILARLNAGHSGYNQLLPEA VLPAPAQKVETPKATVIPAPEAASTSAPIAIKQKMTASWSHQGETYYRYSTIVTNNSPKAVNNLKLYINKLYGPVWGVTKSGDSYGFPAWIKSLAAGKSI EFVYIHTAPAADVSVSSYTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	1.0	0.9558
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	8.1	0.9111
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	9.1	0.8486
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	9.9	0.8560
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	11.9	0.9020
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	14.8	0.8809
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	15.4	0.8772
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	18.4	0.8996
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	18.5	0.8149
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	21.9	0.8962

Compare expression of checked genes

Lus10003888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.