Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23820 651 / 0 Pectin lyase-like superfamily protein (.1) AT5G41870 577 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 441 / 2e-152 Pectin lyase-like superfamily protein (.1) AT4G33440 398 / 2e-135 Pectin lyase-like superfamily protein (.1) AT3G16850 397 / 4e-135 Pectin lyase-like superfamily protein (.1) AT3G48950 390 / 2e-132 Pectin lyase-like superfamily protein (.1) AT3G61490 389 / 6e-132 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 380 / 4e-128 Pectin lyase-like superfamily protein (.1) AT2G23900 375 / 1e-126 Pectin lyase-like superfamily protein (.1) AT3G42950 367 / 4e-123 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032374 [exp] 720 / 0 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 686 / 0 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 428 / 2e-147 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 421 / 4e-144 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 417 / 9e-143 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 401 / 2e-136 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 390 / 2e-132 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 390 / 3e-132 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10037714 [exp] 387 / 3e-131 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139100 [exp] 681 / 0 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 448 / 4e-155 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 447 / 1e-154 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 422 / 1e-144 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 414 / 1e-141 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 410 / 1e-140 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 400 / 1e-136 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 397 / 2e-135 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 395 / 3e-134 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 393 / 3e-133 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10003890 pacid=23144345 polypeptide=Lus10003890 locus=Lus10003890.g ID=Lus10003890.BGIv1.0 annot-version=v1.0 ATGTCAAAATTCCATCTCATTCCCGTTCTCCTCTGCTGTGCTGTCTTGGCGGCGTCATTTTGGGTTTCTGACGCCAGGCAGGCGACATGCTCCGGGATAG TTCCAATGAGGTACCGGAGCGATAAGATATCGATAAAGGACTTCGGAGGTGTCGGCGACGGGAGAACTTTGAACACCAAGGCTTTTAGGGAAGCAATTTA CCGGATTCAGCATTTGAGGAGGAGGGGAGGCACTCTGCTCTACATACCGCCCGGTGATTATCTGACGGAGAGCTTCAACCTCACTAGTCATATGACTCTT TACTTGGCTAGAGGCGCCACCATTAAAGCCACTCAGAAAACGTGGAATTGGCCTTTAGTTGCTCCTTTGCCGTCGTATGGACGTGGGAGAGAGCTCCCTG GTGGAAGGTACATGAGCTTTATTCATGCAGATGGAGTGCATGACGTGGTCATAACAGGTGAGAATGGCACAATTGATGGGCAAGGAGGTGTTTGGTGGGA TATGTGGAGGCAGCAAACTCTTCGATATACAAGACCGGGTCTCGTCGAGTTGATGAATTCGAAAGGCATAATCATTTCAAATGTGATCTTCAAGAATTCT CCCTTTTGGAACATTCACCCTGTTTATAGCAGTCACATTGTAATCCGATATGTGACCATCTTGGCTCCCCACGACTCACCTAATACCGATGGAGTCGATC CAGATTCAAGCTCTAACGTCTGCATAGAAGATTCCTACATTACCACCGGTGACGATCTAGTAGCTGTGAAGAGTGGCTGGGACGAATATGGGATCGCCTA CGGCCGCAGAAGCTCATACATCACCATCCGACGAGTTACAGGATCATCCCCGTTCGCTGGGATCGCAATAGGAAGCGAAACATCTGGGGGAGTAGAGAAC GTCCTGGCAGAGAACATAAACCTCTACAACATGGGAATCGGCATACACATAAAAACAAACATGGGCAGAGGAGGTTTCATAAGGAACATCACATTTGCCA ATGTCTACATGGAAGACGTACGAACTGGAATCAAGATCTCTGGCGATGTTGGAGACCACCCCGATGGGAATTTCAACCCAAATGCTCTGCCCACCGTGAA GGGGATAACACTCAAAGGCATATGGGGTCAAAAGGTTCAGCAGCCTGGGTTGATTCGCGGGTTGAAGGATTCTCCTTTTGAAGGAGTTTGCATGTCTAAC ATCAATCTCCATAGCAGCGTCCCAAGACCAAGATCTTCGCAGCAGCCATGGAAATGCTCTGACGTTAGCGGTGTTGCCATTGAGGTCAGCCCTTCTCCCT GCTCTGAACTCGCTTCCACTCACTACCGCGCCACCAGCTCTTGCTCCCATCATTTTTAA
AA sequence Show only first row Show all	>Lus10003890 pacid=23144345 polypeptide=Lus10003890 locus=Lus10003890.g ID=Lus10003890.BGIv1.0 annot-version=v1.0 MSKFHLIPVLLCCAVLAASFWVSDARQATCSGIVPMRYRSDKISIKDFGGVGDGRTLNTKAFREAIYRIQHLRRRGGTLLYIPPGDYLTESFNLTSHMTL YLARGATIKATQKTWNWPLVAPLPSYGRGRELPGGRYMSFIHADGVHDVVITGENGTIDGQGGVWWDMWRQQTLRYTRPGLVELMNSKGIIISNVIFKNS PFWNIHPVYSSHIVIRYVTILAPHDSPNTDGVDPDSSSNVCIEDSYITTGDDLVAVKSGWDEYGIAYGRRSSYITIRRVTGSSPFAGIAIGSETSGGVEN VLAENINLYNMGIGIHIKTNMGRGGFIRNITFANVYMEDVRTGIKISGDVGDHPDGNFNPNALPTVKGITLKGIWGQKVQQPGLIRGLKDSPFEGVCMSN INLHSSVPRPRSSQQPWKCSDVSGVAIEVSPSPCSELASTHYRATSSCSHHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	2.0	0.9568
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	2.6	0.9625
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	2.8	0.9544
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	3.0	0.9410
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	3.7	0.9282
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	4.9	0.9449
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	5.5	0.9554
					Lus10031884 [exp]	6.2	0.9286
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	7.4	0.9470
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	7.5	0.9196

Compare expression of checked genes

Lus10003890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.