Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 140 / 2e-37 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 134 / 3e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 129 / 2e-33 Leucine-rich repeat protein kinase family protein (.1.2) AT3G02880 126 / 1e-32 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 121 / 7e-31 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 120 / 2e-30 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G23740 119 / 5e-30 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 117 / 1e-29 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 116 / 3e-29 RKL1 receptor-like kinase 1 (.1) AT3G17840 108 / 1e-26 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001900 [exp] 514 / 0 AT2G26730 145 / 6e-39 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 135 / 8e-36 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 135 / 1e-35 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031909 [exp] 131 / 4e-35 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10031350 [exp] 133 / 5e-35 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 132 / 1e-34 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10021383 [exp] 129 / 2e-33 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031337 [exp] 126 / 2e-32 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10038828 [exp] 125 / 3e-32 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138900 [exp] 283 / 8e-95 AT3G08680 142 / 2e-37 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 142 / 2e-38 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 139 / 3e-37 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 138 / 7e-37 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 138 / 8e-37 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 134 / 1e-35 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 133 / 3e-35 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 130 / 4e-34 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 122 / 3e-31 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.003G136100 [exp] 121 / 8e-31 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003891 pacid=23144314 polypeptide=Lus10003891 locus=Lus10003891.g ID=Lus10003891.BGIv1.0 annot-version=v1.0 ATGGGAGAGAGCCATCTTGGGTTGACGGAGAAGTCGGTTCTATTGGACGGGAAAGTGTACGCCGTTAAGAGATTTAGGAAGGTTAGTCTAGGGAGGGCAG AGTTTGGGAGGAGAATCCAAAGGCTGGCAGAGGTTAGTCAGAAGTGTGAGTATCTTGTTCCTGTTACTGCCTACCTTTACGCCAAGAGGATTAAGTTCTT GCTCTGCCATTACTATCCCATGGGAAGCCTCGCTGATTTACTTGCTGGAGGGAGAGAACGTGGGAACACTGTCCTGAATTGGAATCAGAGGCTAAGGATT GCTCTAAGCGTTTGTCGGGCGATTGCCTTCATCCACACTCGCTGCCCTTCGCACGAAAGTGGTAACATGCCAACCTTACAAATGAATGTCCACGGCAACA TCAAGGCCTCTAACGTTATGATCAACGTTGACTTCACCGCCTGTCTATCCGACCATGGCTTCATCCAATTGGCCGATCATCATCATCAGCAGCAGCTCGA TGACATGTGTCGACCGAAGTACGAGGATGGACCGATACTGTTTGAAACTAAGTTGTGCCAGAAGAGTGACATCTACAACTATGGGACGATGTTATTGGAC ATGCTTGGTGGGCCAGAGGCTGCGGGAAATAGGGACTGCATTGTGAAGAGGAAGGAAGAGATGACGAGTGAAGAAAGAGGAATAAGTAGGTGGTTAGAAG GTCAGTTGCTTGAGTTTAAAGTAGAGGGGAAAGAAATGAAGCAAGTTTTGCAAGTGTTAGATATTGCATTGGCTTCCACTAATAAGTTGGCTGAGGGTAG GCCTTCCATTCAACAGATTCTGAATTTCCTTGAGGATGTCATTGCTTGA
AA sequence Show only first row Show all	>Lus10003891 pacid=23144314 polypeptide=Lus10003891 locus=Lus10003891.g ID=Lus10003891.BGIv1.0 annot-version=v1.0 MGESHLGLTEKSVLLDGKVYAVKRFRKVSLGRAEFGRRIQRLAEVSQKCEYLVPVTAYLYAKRIKFLLCHYYPMGSLADLLAGGRERGNTVLNWNQRLRI ALSVCRAIAFIHTRCPSHESGNMPTLQMNVHGNIKASNVMINVDFTACLSDHGFIQLADHHHQQQLDDMCRPKYEDGPILFETKLCQKSDIYNYGTMLLD MLGGPEAAGNRDCIVKRKEEMTSEERGISRWLEGQLLEFKVEGKEMKQVLQVLDIALASTNKLAEGRPSIQQILNFLEDVIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10003891 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	9.4	0.7064
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	9.5	0.6798
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10027741 [exp]	15.1	0.6616
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10034928 [exp]	18.0	0.6872
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	29.5	0.6719
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	30.9	0.6581
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	34.6	0.7014
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	36.7	0.6048
AT4G30770			Putative membrane lipoprotein ...		Lus10037695 [exp]	39.1	0.6426
AT2G38460		FPN1, ATIREG1	FERROPORTIN 1, ARABIDOPSIS THA...		Lus10001263 [exp]	46.0	0.6426

Compare expression of checked genes

Lus10003891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.