Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 296 / 4e-102 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021037 [exp] 433 / 8e-155 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10003902 [exp] 360 / 1e-127 AT5G41850 231 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10023100 [exp] 196 / 2e-61 AT5G41850 172 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10032373 [exp] 192 / 1e-60 AT5G41850 163 / 6e-50 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092800 [exp] 327 / 4e-114 AT5G41850 314 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003892 pacid=23144333 polypeptide=Lus10003892 locus=Lus10003892.g ID=Lus10003892.BGIv1.0 annot-version=v1.0 ATGTGCTGTTGCGTTTCGATTTTTGTCCCTAGGATCCGAAACGTTTCTTCGCATATCGAGGAAAAGAAGGCAAATTTCCATTGTTCATCTAACATGGCTG ATTCTACTCGGGCGAAGCGAAGACGACAGAACGAAGACTCAAAGAACACATCACTATCGACTTCGCCAGTGGTTGTGTTCGCTAACGGAGCTGGTGCTCC CTCGTCTTCTGAATGGATGATTAGGTGGAAGGAGTTGTTGAAGAACAGCGTTGATGCTGTTGAAGTGGTCACTTTTGATTATCCCTATTTGTCGGGTGGG AAGAAGAGGGCTCCTCCAAAAGCGGAGAAATTGATCGAGTTCCACAAGGGTATTGTTAAAGAAACCACTGAGAAATACCCTGGTCATCCTTTGAGTTTGG CTGGAAAATCTATGGGATCCAGAGTGAGCTGCATGATAGCTGCGGACGTGGAGATTGCAGCTTCAGCAATAATATGCATGGGATACCCGCTCAAGGGTAC GAATGGAAAGATTCGGGATGAAACACTTCTCCAACTTGATATCCCCGTAATGTTCGTTCAGGGGAACAAAGATACCCTTTGCCCTCTGGACAAGCTCGAA ATAGTTCGAAAGATGATGAAATGCGAGAGTGAGTTGTATGTTATTGATGGAGGAGGCCACTCCTTCAAAATAGGGAAGAAGCATCTGCAGGAAAATGGGT TGAAACAAGATGAGGCTGAAATGAGTGCTGTTCAGGCTCTTGGCTTGTTCATTTCCAGTCGTCTCAGAGGTGACTAG
AA sequence Show only first row Show all	>Lus10003892 pacid=23144333 polypeptide=Lus10003892 locus=Lus10003892.g ID=Lus10003892.BGIv1.0 annot-version=v1.0 MCCCVSIFVPRIRNVSSHIEEKKANFHCSSNMADSTRAKRRRQNEDSKNTSLSTSPVVVFANGAGAPSSSEWMIRWKELLKNSVDAVEVVTFDYPYLSGG KKRAPPKAEKLIEFHKGIVKETTEKYPGHPLSLAGKSMGSRVSCMIAADVEIAASAIICMGYPLKGTNGKIRDETLLQLDIPVMFVQGNKDTLCPLDKLE IVRKMMKCESELYVIDGGGHSFKIGKKHLQENGLKQDEAEMSAVQALGLFISSRLRGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003892 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	10.9	0.8531
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	14.2	0.8416
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	19.8	0.8485
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	20.0	0.8471
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	21.2	0.8346
AT5G06440			unknown protein		Lus10029361 [exp]	26.7	0.8107
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	27.2	0.8224
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	28.8	0.7897
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	32.7	0.8434
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	39.2	0.8222

Compare expression of checked genes

Lus10003892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.