Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021037 [exp] 47 / 2e-06 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003893 pacid=23144341 polypeptide=Lus10003893 locus=Lus10003893.g ID=Lus10003893.BGIv1.0 annot-version=v1.0 ATGGCTTACATGCAGTGTTACAGACCCGTTGAACAGGATCCTTGCTACCAGCAGGCTAAGCCCCACTCTGCTGCTGGTATCTATGACACTTTCCAGCAGC ACACTAACCAGCAACACCACCACCACAATGCTACGGCTTTCCCCAAACCAACTTCAATGGTGGCTACAACACCCACAAGCCCTCCCACGGCCAAGACACA CTCCAACTCCAATGTCTCTGGCTATAACAATCACAAGTATAGTCAGCATGGACATGGAACCGGATTCATCACCAGTAAAGACCATCCCGCACACCATGGA TCTCAGACAATGTCTTCTGCAGTCGGGTCCTTCAAGTCTGAGAAGAAATTGAAGGAGAAGTTCTATTCGGGTGAGTACAAGAAGAAATCCAGCGGCCACA AGAAGAACAAGAAAAAGTGCGGAAATGACAGTGGCAGTGGCAGCGACAGCAGCAGCGGCAGCGACAGTGATTAA
AA sequence Show only first row Show all	>Lus10003893 pacid=23144341 polypeptide=Lus10003893 locus=Lus10003893.g ID=Lus10003893.BGIv1.0 annot-version=v1.0 MAYMQCYRPVEQDPCYQQAKPHSAAGIYDTFQQHTNQQHHHHNATAFPKPTSMVATTPTSPPTAKTHSNSNVSGYNNHKYSQHGHGTGFITSKDHPAHHG SQTMSSAVGSFKSEKKLKEKFYSGEYKKKSSGHKKNKKKCGNDSGSGSDSSSGSDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003893 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	2.4	0.9664
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	2.4	0.9658
					Lus10039496 [exp]	3.3	0.9691
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	3.9	0.9635
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	5.6	0.9242
AT2G24960			unknown protein		Lus10042421 [exp]	7.2	0.9640
AT2G24600			Ankyrin repeat family protein ...		Lus10024845 [exp]	7.6	0.9259
AT1G28540			unknown protein		Lus10024553 [exp]	8.6	0.8844
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	8.7	0.8843
					Lus10034352 [exp]	8.8	0.9614

Compare expression of checked genes

Lus10003893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.