Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11070 195 / 2e-60 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 165 / 2e-48 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT5G24110 131 / 6e-36 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 113 / 3e-29 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT3G56400 95 / 3e-22 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 95 / 6e-22 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT2G40740 87 / 2e-19 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT5G01900 80 / 5e-17 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66600 72 / 2e-14 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT1G66550 71 / 4e-14 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001902 [exp] 577 / 0 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10023099 [exp] 335 / 2e-114 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10032372 [exp] 333 / 1e-113 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10039331 [exp] 148 / 2e-41 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001062 [exp] 141 / 5e-39 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10030517 [exp] 92 / 4e-21 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 92 / 5e-21 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 89 / 4e-20 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029022 [exp] 88 / 7e-20 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138600 [exp] 313 / 4e-106 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.001G092900 [exp] 305 / 1e-102 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 198 / 7e-61 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 186 / 5e-56 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.014G096200 [exp] 176 / 2e-52 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.006G109100 [exp] 124 / 5e-33 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 100 / 6e-24 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 93 / 2e-21 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090400 [exp] 89 / 1e-19 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 85 / 2e-18 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10003894 pacid=23144326 polypeptide=Lus10003894 locus=Lus10003894.g ID=Lus10003894.BGIv1.0 annot-version=v1.0 ATGGAAGGAAGGTGGACCTGTGAGCAGAGGGCCGCACTGGTGAATGAGCTCATCCAAGGGATCCAATTCGCTAAACAGTTGAGATTCCATCTCAAGGAGG AGTCATCTGCTGTTGATGTTGCAGTTGGTTTGGTTGAGAGAATCCTGTCGTCTTATGACAAGGCTTTGCTGATTCTCAATTGGAGTACTGGACCAATGGG ACAACAACCCCTTCAAGCAGCAACAAGTTCTGGTGTTCCTGGCTCTCCATTGTCTTGGAATGGAAGTCCTCCTTGGAGTGAAGTTTTTGAAGGAACCAAG GATAACCGAGTTCCTGACTATGCCTCCAAGAAAAGAAAGACAGTGGCCAGATGGACAGATCATGTTAGAATTAGCTCAGAGAATGGCTTAGAAAGTTGTA TCGATGATGGTTATAGCGGGAGGAAGTATGGTCAGAAAGACATGCTAGGAGCCAAATATCCCAGAAGCTATTACTGGTGCACGTACAGAAGCACTCAAAA CTGTTGGGCAGTAAAACAAGTTCAAAGATCAGATGAAGATCCAACCATATTCGAGGTGACATATAGAGGGACCCACACTTGTTCATATGGACAGCAAACA GAGAAACAAGAACAAAAGCAGAGCATCGACTGCAGCAGCAGTAATCAACAGCTAATACCTCAAGACGACTTGCAAAAGGTTATGGAAAACACAGAGATGA TCCCCTTTACTTTCCCTACCACATATCAACTCCAAAAGAACTCATTTCTATCTCCAGCCACACCTCCAGAACCAAGTTACAGACCTGTTTCTCGACTAGG AGAGACTCAAACGTCCTTGCAGCCTTTAAATTTGGATTTTGCTGATATAATTTCAGCTCATACTTCAGTCAGCTCCACCAATTCTCCTATCCTGGACTTG GACTTCCAACTTGACTCATTCGAACTTGTCCCCAACTTCTCATATGACCCAGAATTTTTCCCTTAA
AA sequence Show only first row Show all	>Lus10003894 pacid=23144326 polypeptide=Lus10003894 locus=Lus10003894.g ID=Lus10003894.BGIv1.0 annot-version=v1.0 MEGRWTCEQRAALVNELIQGIQFAKQLRFHLKEESSAVDVAVGLVERILSSYDKALLILNWSTGPMGQQPLQAATSSGVPGSPLSWNGSPPWSEVFEGTK DNRVPDYASKKRKTVARWTDHVRISSENGLESCIDDGYSGRKYGQKDMLGAKYPRSYYWCTYRSTQNCWAVKQVQRSDEDPTIFEVTYRGTHTCSYGQQT EKQEQKQSIDCSSSNQQLIPQDDLQKVMENTEMIPFTFPTTYQLQKNSFLSPATPPEPSYRPVSRLGETQTSLQPLNLDFADIISAHTSVSSTNSPILDL DFQLDSFELVPNFSYDPEFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	0	1
AT1G78760			F-box/RNI-like superfamily pro...		Lus10024701 [exp]	3.2	0.8338
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	4.2	0.8360
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	5.3	0.8047
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	6.9	0.7988
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	8.8	0.7841
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040100 [exp]	9.4	0.7185
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	14.4	0.7925
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	15.0	0.7626
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	17.3	0.8133
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	22.3	0.7276

Compare expression of checked genes

Lus10003894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.