Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64355 172 / 8e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001903 [exp] 212 / 2e-71 AT1G64355 184 / 2e-60 unknown protein Lus10023098 [exp] 162 / 4e-51 AT1G64355 152 / 7e-47 unknown protein Lus10032371 [exp] 158 / 2e-49 AT1G64355 152 / 5e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138500 [exp] 172 / 4e-55 AT1G64355 224 / 3e-75 unknown protein Potri.001G093001 [exp] 129 / 2e-39 AT1G64355 123 / 3e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12159 [flax] [poplar] DUF3593 Protein of unknown function (DUF3593)
Representative CDS sequence Show only first row Show all	>Lus10003895 pacid=23144315 polypeptide=Lus10003895 locus=Lus10003895.g ID=Lus10003895.BGIv1.0 annot-version=v1.0 ATGTCCATAAACACAAACACCAGCTGCCGGCGACCGCAATTCAGGCTAGTTCCCATTTCCCCGCTCTCAGTTCATTTGGCGGCGGGTTCTCCATTTCTCA TCCGAATTCCCCACAAAGAACCCATAGAGTCCAGATGTTACAGAGGGATAAGAAGGGATGGTTCTAGAGGAGGAAGAGTTGTGTGCAGCGGGTGGTTTCT CCCGGTGGATCCATGGGCGCCAACCATTGATTCACAGAGCATTGCATCTCAGCTTTTTGCTTTCTCTTTGTTCCCTTACATTGGTTTCTTATACTTCCTC ACCAAATCCAAGACAGCTCCAAGCCTCACCCTTTTCGGTTTCTACTTCTTGCTCGCCTTCGTTGGCGCTACAACAAAAGTGCAGTATGGAACTTCCTTGT CTAATGTGGATTTGCTGCACGGTGGTGCTGAATCACTTCTCACCTTTACAAACTTATTCATCGTCCTGGGCTTGAGACAAGCTCTCAGGAAGGGGAGTGA TGCTGACAAGCAGGACATCTGA
AA sequence Show only first row Show all	>Lus10003895 pacid=23144315 polypeptide=Lus10003895 locus=Lus10003895.g ID=Lus10003895.BGIv1.0 annot-version=v1.0 MSINTNTSCRRPQFRLVPISPLSVHLAAGSPFLIRIPHKEPIESRCYRGIRRDGSRGGRVVCSGWFLPVDPWAPTIDSQSIASQLFAFSLFPYIGFLYFL TKSKTAPSLTLFGFYFLLAFVGATTKVQYGTSLSNVDLLHGGAESLLTFTNLFIVLGLRQALRKGSDADKQDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64355			unknown protein		Lus10003895 [exp]	0	1
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	3.2	0.9430
AT5G37360			unknown protein		Lus10004762 [exp]	4.5	0.9390
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	5.5	0.9317
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	6.3	0.9288
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	8.3	0.9359
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	8.7	0.9067
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	13.1	0.9356
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	13.2	0.9305
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	15.4	0.9188
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	16.2	0.9250

Compare expression of checked genes

Lus10003895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.