Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64350 414 / 9e-146 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT3G01340 72 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G30050 70 / 2e-13 transducin family protein / WD-40 repeat family protein (.1) AT2G26060 41 / 0.0009 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001904 [exp] 588 / 0 AT1G64350 442 / 3e-157 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037571 [exp] 66 / 4e-12 AT2G30050 523 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011429 [exp] 66 / 4e-12 AT2G30050 525 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138300 [exp] 460 / 4e-164 AT1G64350 457 / 4e-163 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G068900 [exp] 67 / 2e-12 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G100400 [exp] 66 / 7e-12 AT2G30050 517 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 56 / 1e-08 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G093401 [exp] 49 / 2e-07 AT1G64350 39 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003896 pacid=23144343 polypeptide=Lus10003896 locus=Lus10003896.g ID=Lus10003896.BGIv1.0 annot-version=v1.0 ATGGAGAAGTCACTAGCAAAGCTTGATAAAGGTACGACCTGCTCGTCCTGGAACTACTCTGGTGACCGTTTGGCCACCGGATCCATCGACGGAACGCTCT CTATCTTCGATTCAGAGAATCCTGCGTCTTCCTCCTTCAATTGTACCTCCAAAGTTAAGGTGGGTGAGGGTAGTGTTGTCAAGGTCGTATGGATTCCGCA ACTATTTGGCGACGCAGTGGCTTCCATTGACGGGCATGGAAGCATGTATTTGTGGGAGGAGGTGGCTGAAGATGGAAAAGCCGTTGAGTGGAAGCATTGC AAAAGCTTCCAGACCAACTCTACTAAAGTTTTGGATGTTCAGTTTGGAGTCCTCCGCACAAGTTTGAAAATGGTTGTTGCATATTCAGATGGACATGTGA AAGTGTATGAGCTCTCCGATCCATTGAATTTAAAGAATTGGCAACTTCAGGCTGAATTTCAGAATCTTACTGATTCAGTAGCTAAATTGGCTAAGGTTTC ATGCTCCTCTGCTTCCATTTCTTGGAACCCGCAAAGTGGCGAGAACCAGGAATTGAGCTTTGTTTTGGGCTTCAATTCTGATACACCACTACTTAACTCT TCAAAGGTTTGGGAATTTGATATTGACCATCAAAGATGGGTTTCAGTAGCTGAGCTGGCTTTGCCTGAAGACAGAAATGATCAGGTTTTCTGTGTTGCGT GGGCAGCAAACATTGGCAGGCCAAATGAGATCATAGCTGTTTCTTCCAATAAGGGCATCACTATATGGCATCTCGGAACGAACCCTGACATGGAAGGCAG ACTTGCAGTGGAGAGGGTTGCATTGCTTTCTGGCTTCGAAGAAGAGGTGTGGCAAATGGAATGGGATATGAGTGGAATGACTTTAGCAACGACAGGGAGT GATGGAATGGTGAGACTGTGGCAATCCAACTTGAATGGTGTTTGGCATGAGCAAGCAGCATTTGAACCGACTACTTAG
AA sequence Show only first row Show all	>Lus10003896 pacid=23144343 polypeptide=Lus10003896 locus=Lus10003896.g ID=Lus10003896.BGIv1.0 annot-version=v1.0 MEKSLAKLDKGTTCSSWNYSGDRLATGSIDGTLSIFDSENPASSSFNCTSKVKVGEGSVVKVVWIPQLFGDAVASIDGHGSMYLWEEVAEDGKAVEWKHC KSFQTNSTKVLDVQFGVLRTSLKMVVAYSDGHVKVYELSDPLNLKNWQLQAEFQNLTDSVAKLAKVSCSSASISWNPQSGENQELSFVLGFNSDTPLLNS SKVWEFDIDHQRWVSVAELALPEDRNDQVFCVAWAANIGRPNEIIAVSSNKGITIWHLGTNPDMEGRLAVERVALLSGFEEEVWQMEWDMSGMTLATTGS DGMVRLWQSNLNGVWHEQAAFEPTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	0	1
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	1.7	0.8958
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	1.7	0.8890
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	2.4	0.8957
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	2.8	0.8828
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	5.7	0.8474
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	6.0	0.8461
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	7.7	0.8762
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	8.9	0.8195
AT1G76405			unknown protein		Lus10025161 [exp]	9.2	0.8389
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	9.3	0.8058

Compare expression of checked genes

Lus10003896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.