Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 218 / 1e-67 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 213 / 7e-66 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 201 / 3e-61 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 182 / 3e-54 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 181 / 1e-53 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 169 / 6e-50 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 166 / 8e-48 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 165 / 2e-47 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT3G16520 164 / 4e-47 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT3G50740 163 / 9e-47 UGT72E1 UDP-glucosyl transferase 72E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001905 [exp] 414 / 6e-144 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10001906 [exp] 400 / 2e-138 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 396 / 4e-137 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 228 / 2e-71 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 226 / 8e-71 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 214 / 3e-66 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 211 / 7e-65 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 211 / 9e-65 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024035 [exp] 191 / 4e-57 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138200 [exp] 233 / 2e-73 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 231 / 1e-72 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 222 / 3e-69 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 220 / 2e-68 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 190 / 7e-57 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 189 / 1e-56 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030300 [exp] 188 / 3e-56 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G030400 [exp] 186 / 1e-55 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.004G070900 [exp] 183 / 3e-54 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.007G029800 [exp] 182 / 4e-54 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003897 pacid=23144330 polypeptide=Lus10003897 locus=Lus10003897.g ID=Lus10003897.BGIv1.0 annot-version=v1.0 ATGTGCACTAAATTGGAGGTGGGGGTTAATATTGGTGGGAATTCAATTAGTTGGTTAGAGATCCAACTAATTTTGTGGTGCTTTAATATTGGTGGTACAT ATTTTTGTTGCACATCAATTATCCGGGACCAACACAAAGCTCTAATCGAGGAACGCTCTCGAACCGGATCTGGGCATGTGGTTTACCCTATTGTTCCAGT AGCACGGCTCGAGTCCGATGAGGATTTAGCAAAGTTGAGCAACGAGTCAGTTGAGTGTTTGGAGTGGTTGGATAAGCAGCAAGAGTCCTCAGTTCTCTTC ATTTCATTTGGAAGCGGCTCTGGCTCCAGACAGTCTAAAGCGCAAGTCGACGAACTAGCCCATGGGCTGGCAATGAGTGGGAAGAGATTCATCTGGGTGT TTAAATCACCAGGTAACGATGTCGTTCCCTCGAGTTTCTTACCCAAGGGCTTTTTGGCAAAGATCAAAGGGGTTGGTTTAGTGATTCCTGATTGGGCACC TCAGATTCGAATCCTGAGCCACGGTTCGACCGGTGGGTTCATGAGCCATTGCGGGTGGAACTCAAACTTGGAGAGCATAACCAATGGGGTGCCGGTGCTT GCCTGGCCGGGCCAGGCAGACCAAACGATGAATGCGGTGTTCTTGGTAGAGGATGCCAAAGTTGGTTTGAGGATTGATCAAAGCCGTGGGGAAGATGGGA TAGTTGGGAGAGAGGAAATTGCTCGATGTGTGAAGGCTGTATTGGAGGGGGATGAAGCGCAGTTGTTTAGAAGGAACATGAAGGAATTGAAGGCTGCTGC AAACACTGCAATTGGAAACGGTGGGTCGTCCACGAAATCGCTGGATGAAGTGGCAAACCTGTGGAAAAATCAGATTCCGTAG
AA sequence Show only first row Show all	>Lus10003897 pacid=23144330 polypeptide=Lus10003897 locus=Lus10003897.g ID=Lus10003897.BGIv1.0 annot-version=v1.0 MCTKLEVGVNIGGNSISWLEIQLILWCFNIGGTYFCCTSIIRDQHKALIEERSRTGSGHVVYPIVPVARLESDEDLAKLSNESVECLEWLDKQQESSVLF ISFGSGSGSRQSKAQVDELAHGLAMSGKRFIWVFKSPGNDVVPSSFLPKGFLAKIKGVGLVIPDWAPQIRILSHGSTGGFMSHCGWNSNLESITNGVPVL AWPGQADQTMNAVFLVEDAKVGLRIDQSRGEDGIVGREEIARCVKAVLEGDEAQLFRRNMKELKAAANTAIGNGGSSTKSLDEVANLWKNQIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	0	1
					Lus10037540 [exp]	8.1	0.7792
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10023027 [exp]	11.0	0.7513
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	14.8	0.7682
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10016856 [exp]	16.2	0.7694
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	22.6	0.7655
					Lus10043242 [exp]	24.2	0.7075
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	24.7	0.7449
					Lus10032489 [exp]	25.0	0.6366
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	25.7	0.7034
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	29.0	0.7183

Compare expression of checked genes

Lus10003897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.