Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 412 / 3e-140 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 406 / 5e-138 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 401 / 3e-136 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 275 / 4e-87 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 273 / 3e-86 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 265 / 3e-83 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 262 / 5e-82 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 261 / 8e-82 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 249 / 4e-77 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G07250 241 / 4e-74 UGT71C4 UDP-glucosyl transferase 71C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001906 [exp] 918 / 0 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 753 / 0 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003897 [exp] 397 / 2e-137 AT4G01070 218 / 1e-67 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 403 / 1e-136 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 400 / 1e-135 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 380 / 8e-128 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 378 / 5e-127 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 353 / 2e-117 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024035 [exp] 297 / 2e-95 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138200 [exp] 480 / 7e-167 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 436 / 1e-149 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 429 / 5e-147 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 389 / 1e-131 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 335 / 2e-110 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 309 / 5e-100 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G069600 [exp] 299 / 2e-96 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 298 / 4e-96 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.007G030400 [exp] 296 / 2e-95 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.004G071000 [exp] 295 / 1e-94 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003900 pacid=23144317 polypeptide=Lus10003900 locus=Lus10003900.g ID=Lus10003900.BGIv1.0 annot-version=v1.0 ATGGAAGATGTGGTTGATGCCGCCTCCTCAGAACCAAATCTTCGAGTAGTGATGGTGCCTTCCCCAGGCCACGGCCACCTAATTCCCTTCGTTGAACTAT CCAAACGTCTCCTCCTCCGCCATAATTTCTCCATCACAATTATTGTTCCTGACAATGGTTCTGGCATGATACCCCAACGCCAACTCCTCCAAACTCTCCC ACCCACCGTCTCCCCTCTTTACCTCCCTCCGGTCAGCTTGTCCGACGTCCCCTCTGATGCCAATGTCATCACCCGTGTCACTCTCACCATGATTCGCTCT CTACCCGCCATCCATGACGCCTTAATTCAACTCCAACACGACAATGGCAGCCGAGTGGTCGCTGCTGTCGCCGATTTCCTCAGCGCAGACGCCCTCCAGG TGGCCTCCCAACTTCAAATCCCTCCCTACGTCTTCTACACGTGTAGCGCCTTCCACCTGACTTTAGGGCTGAAAGCCCCTGAACTCCATTGGACCCACCC GGAAGAATTCAGGGACTCAAGTGAACCGCTGAAGCTACCCGGTTGCGTCCCGTTTCCTAATGCGGATCTTCCTGACTCGTATCTGGACAAGAAGGACGCT TACAAGTGGATGCTCCACGTCCACGAACGCATCTCCGCTGATGCCGCAGGAATAATGATCAATAGCTTTATGGAGTTGGAGAGTGAGATTTTCAAAGCTT TGACTGAGGAACGCTCTCGAACTGGATTTGGGCCCGCGGTTTACCCCATAGGCCCAGTACCGCGGCTCGAATCCGACGAGGATTTAGTCAAATTGAGCAA CGAGTCAATTGAGTGTTTGAAATGGTTAGATAAACAACCAGAGTCCTCTGTTCTCTTCATTTCATTCGGAAGCGGCGGGAAACAGTCTCAAGCTCAATTC GACGAATTAGCCCACGGGTTAGCAATGAGTGGGAAGAGATTCATCTGGGTGATTAAACCACCGGGTAACAACATTGTCGAAGTGACCGATTCCATCGTTC CGTCGAGTTTCTTACCCAAGGGGTTTTTGGAAAAGACCAAACGTGTGGGTTTAGTGATTCCCGGTTGGGCACCCCAAATTCGAATCCTGAACCACGGTTC AACCGGTGGGTTCATGAGCCATTGCGGATGGAACTCGAGCTTAGAGAGCATAACCAATGGGGTGCCGGTGCTTGCATGGCCAAACCACGCGGAGCAGAGG ATGAATGCGGTGTTCTTGGCAGAGGATGCCAAAGTTGCTTTGAGGATTGATGAAAGCAGCGGGAAAGATGGGATAGTTGGGAGAGAGGAAATTGCTGGAT ATGTAACTGCTGTGTTGGATGGGGAAGAAGGTAAGTTGCTCAGAAGGAAAGTGAAGGAATTGAAGGCCGCTGCTAACACTGCCATTGGAAACGATGGGTC GTCCACGAAATCGTTGGATCAAGTGGCGAACCTGTGGAAGAATCAGAATCATCCGTAG
AA sequence Show only first row Show all	>Lus10003900 pacid=23144317 polypeptide=Lus10003900 locus=Lus10003900.g ID=Lus10003900.BGIv1.0 annot-version=v1.0 MEDVVDAASSEPNLRVVMVPSPGHGHLIPFVELSKRLLLRHNFSITIIVPDNGSGMIPQRQLLQTLPPTVSPLYLPPVSLSDVPSDANVITRVTLTMIRS LPAIHDALIQLQHDNGSRVVAAVADFLSADALQVASQLQIPPYVFYTCSAFHLTLGLKAPELHWTHPEEFRDSSEPLKLPGCVPFPNADLPDSYLDKKDA YKWMLHVHERISADAAGIMINSFMELESEIFKALTEERSRTGFGPAVYPIGPVPRLESDEDLVKLSNESIECLKWLDKQPESSVLFISFGSGGKQSQAQF DELAHGLAMSGKRFIWVIKPPGNNIVEVTDSIVPSSFLPKGFLEKTKRVGLVIPGWAPQIRILNHGSTGGFMSHCGWNSSLESITNGVPVLAWPNHAEQR MNAVFLAEDAKVALRIDESSGKDGIVGREEIAGYVTAVLDGEEGKLLRRKVKELKAAANTAIGNDGSSTKSLDQVANLWKNQNHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	0	1
AT2G36885			unknown protein		Lus10013829 [exp]	1.7	0.8629
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	5.3	0.8356
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	5.5	0.8625
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	7.1	0.8580
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	8.1	0.8343
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	9.8	0.8139
AT2G36885			unknown protein		Lus10026542 [exp]	9.9	0.8045
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	12.2	0.8203
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	13.4	0.8074
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	13.5	0.7951

Compare expression of checked genes

Lus10003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.