Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 231 / 4e-77 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021037 [exp] 371 / 4e-131 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10003892 [exp] 360 / 8e-128 AT5G41850 297 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) Lus10032373 [exp] 147 / 3e-44 AT5G41850 163 / 6e-50 alpha/beta-Hydrolases superfamily protein (.1) Lus10023100 [exp] 137 / 4e-39 AT5G41850 172 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092800 [exp] 266 / 4e-91 AT5G41850 314 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003902 pacid=23144313 polypeptide=Lus10003902 locus=Lus10003902.g ID=Lus10003902.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTACTCGGGCGAAGCGAAGACGACAGAACGAAGACTCAAAGAACACATCACCATCGACTTCGCCAGTGGTTGTGTTCGCTCACGGAGCTG GTGCTCCCTCGTGGAAGGCGTTGTTGAAGAACAGCATTGATGCTGTTGAAGTGATCGCTTTTGATTATCCCTATTTTTCGGGTGGGAAGAAGTGGGCTCC TCCAAAAGGGGAGAAATTGGTGGAATTCCACAAGGGTATTGTTAAAGAAACCACTGATAAGTACCCTAGGAAAGTGAGCTGCATGATAGCTGCCGACGTG GAGATTGTAGCTTCAGCAGTAATATGCTTGGGATATCCGCTCAAGGGAACGAATGGAAAGATTCGGGATGGAACACTTCTCCAACTTGATATCCCAGTAA TGTTCGTTCAGGGGAACAAAGATGTCCTTTGCCCTCCGGACAAGCTCGAAACAGTTCGAAAGAAGATGAAATGCGAGAGTGAGTTGTATGTTATTGATGG AGGAGACCACTCCTTCAAAGTAGGGAAGAAACATCTAAAGGCAAATGGATTGACACAAGATGATGCTGAAATGAGTGTTGTTCAGGCTCTTGGCTTGTTC ATTTCCAGTCGTCTCAGAGGTAACTAG
AA sequence Show only first row Show all	>Lus10003902 pacid=23144313 polypeptide=Lus10003902 locus=Lus10003902.g ID=Lus10003902.BGIv1.0 annot-version=v1.0 MADSTRAKRRRQNEDSKNTSPSTSPVVVFAHGAGAPSWKALLKNSIDAVEVIAFDYPYFSGGKKWAPPKGEKLVEFHKGIVKETTDKYPRKVSCMIAADV EIVASAVICLGYPLKGTNGKIRDGTLLQLDIPVMFVQGNKDVLCPPDKLETVRKKMKCESELYVIDGGDHSFKVGKKHLKANGLTQDDAEMSVVQALGLF ISSRLRGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	0	1
					Lus10031407 [exp]	3.7	0.9307
AT3G53400			unknown protein		Lus10019932 [exp]	10.4	0.9212
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	11.8	0.9047
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	14.0	0.9166
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10016007 [exp]	16.4	0.8950
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	18.5	0.9170
					Lus10021373 [exp]	19.7	0.9075
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	20.6	0.9181
AT4G02830			unknown protein		Lus10014664 [exp]	22.8	0.9121
AT4G02830			unknown protein		Lus10042573 [exp]	23.7	0.9074

Compare expression of checked genes

Lus10003902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.