Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61670 216 / 7e-60 Protein of unknown function (DUF3133) (.1) AT2G46380 211 / 3e-58 Protein of unknown function (DUF3133) (.1) AT4G01090 203 / 1e-55 Protein of unknown function (DUF3133) (.1) AT1G01440 196 / 2e-53 Protein of unknown function (DUF3133) (.1) AT5G05190 67 / 4e-11 Protein of unknown function (DUF3133) (.1) AT2G23460 58 / 2e-08 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT3G56410 54 / 4e-07 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT4G34390 49 / 2e-05 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 45 / 0.0002 XLG3 extra-large GTP-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001910 [exp] 1099 / 0 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 261 / 3e-75 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 223 / 1e-61 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 61 / 1e-09 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 59 / 9e-09 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 57 / 4e-08 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10030508 [exp] 56 / 2e-07 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10019655 [exp] 50 / 9e-06 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 49 / 2e-05 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137700 [exp] 320 / 2e-96 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 293 / 1e-86 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 285 / 9e-84 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.005G131200 [exp] 57 / 4e-08 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 56 / 1e-07 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.019G061400 [exp] 49 / 1e-05 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10003905 pacid=23144328 polypeptide=Lus10003905 locus=Lus10003905.g ID=Lus10003905.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGGTTACAATCTCGTTTAGTTCGGTGCCCAAAGTGCAGAAATCTGCTCACAGAGCTCCCTGGCTTCTCTATCTACCAGTGCGGTGGCTGCA GTGCTGTCCTTCGAGCAAAGACGAAAGCTTTGAACGGAGGGGATAATTATGATAAACTGGAGAGCTTATCAGAGAGTGAAGAAGGAATTTCCATGAACCG ACCTAAGTCCAATACCTTATCGTCTAGGGAAAAAGCTCGAGTCTTTAGGGAAAGAGCTTCTGATGTGATGATCAACGCTCGTTCAGTTGACAGTAATAAT AGTATTATCAACAGAAGGAGGATGATCATGAGAGAGAAGCAAAAGGGTTTCGAGACTAGTTGGGAACATAATGGAGTTTCCGGCACTCACCGTCCATATG TAAGACCTCAACATGTTGATGAGCTTGTTAACAAAAGGGGGGTTGATAGAATGATGGGAGGCGAATGTTCGAACAGTAATTCATATGGTTATGGGAGGAT TAGGAGAGATCATGGTCCTCTTGATGGATCTACTACTACAAGAATTGCTAATCTAGAACATGATCGTGCTCAATTGCTGAGGAAGGTGGATGTGTTAAGC CAGCAACTCAACAATACTCATGAGCATTATGCTGTTTCAGGCAGCGACCGTGTTTGCCAGCAATACGGTCATCATGGACATATGCATCAAATGGAAAGGG CCCCCTTGCATAATAAGGTGATGATTCCAGCACCATTTCCTCATTCGCAGCAGCAATCCCCTCGTGGCTACTTCTCGAGCAATTTCTCTCAAGAACATAG GTTTGAATCTCAGCCTGCTGCTTATTCTTGTTCCATGAGTGCCTCTTCACATGGTTATAACACAAGAGGCAATGGTTATGGTTCCCATCCGCAAATTCAT CCACGATGGCAAGGCGGGGTCAATTCCAACGTGGAGGATAACCATCCAAGAAGGAAAGTGGCAGCTCAAAGGAATAGAAGACTCTGCCGTCCCATAGCCT GTGGAGCTCCATTTATTGTCTGCTGTGCTTGTTTTGAGTTGCTTAAGTTGTCTAAAAAGACCCTAATGCAGGAGAAGAATAAGCTCAAAGTGAGATGTGG ATCCTGTTCAGTAGTTTTGATGCTTGAATTTCAGAGCAAGAAGTTAATGGTTTCTGTTTGTGAAGAAACAACAGAATCACATGTCAACATTGTCGATGGC TCATGTGAAAATGGTGCGAATGTTTGTGAACATTCTGGTGATGTTGAGGTACAATCAGCTACGTTAAACGAAAGTATCCCAACAGAAGAGCAGGTGCTAA CTTGTGAATCTGAGAAGAAGAATGAGGACCATGCTTTTTCATCATCATCATCATCTTGCAGCCCATCAGCGTCTTCTGGGGAAGAGGAGAGCCTGGAGGA GATGGTTGTCCCTCGAGAAGTCTCCTCTCCCACTGACCTCTCTGTAAAAGATGATGAATCTCCATCAATGAGGACACTGCAATACCAGGAGAATTTGATT GATTCCAGGGAACGAATGAGCCTGCAAAGGAAAGGAGACAGAATCATACACACCAGAGACCAAACCAATGACAGCAGAATCACTTCGCGGCAGAGCTCAA GGAAAGAGGAGGAATTTTCCTTCAATGATTATGTAAACATGGATTCATCTGTAGATTTCATAGACACGTCCAAATCAAAACCAGCCCCAATTCACAGGTG GATTGAAACATCCTTTGCTGGTGTGTTCAAGAAAAGCTTGAGGGATCTGGCCAAACCTCCTCAACAAGCAAAGAACAACAGCGTCAACAATAAGAAGGCT AATGTGTTTGTCAATGGGCAGCCAATTCATGAACAGACATTGGCAACGGCTGAGAAGCTAGCCGGGCTGATTCATGCGGGTGACTACTGGTACGATATCC GAGCAGGGTTTTGGGGTGTAATGGGGCAGCCTTGCCTTGGGGTGATTCCACCATTCATAGAAGAGTTCAACTACCCAATGCCACGAAACTGTGCTGCTGG GAACACAGGGGTGTTTGTGAATGGGAGAGAGCTCCATCAGCAAGACCTGGAACTGCTTTGCAAGAGAGGGTTGCCACCCTTGGAGCACAAGTTTTATACA CTGGAAATAGATGGCAGACTTTATGACAATGACACAGGAAAAGAGCTTCACGGGATTGGCAAACTTGCTCCAACGGTTGAGAAGGTAAAGCGTGGGTTTG GTATGAGGGTGCCTTTTGAGAGTGTTGTAGAATGA
AA sequence Show only first row Show all	>Lus10003905 pacid=23144328 polypeptide=Lus10003905 locus=Lus10003905.g ID=Lus10003905.BGIv1.0 annot-version=v1.0 MAEGLQSRLVRCPKCRNLLTELPGFSIYQCGGCSAVLRAKTKALNGGDNYDKLESLSESEEGISMNRPKSNTLSSREKARVFRERASDVMINARSVDSNN SIINRRRMIMREKQKGFETSWEHNGVSGTHRPYVRPQHVDELVNKRGVDRMMGGECSNSNSYGYGRIRRDHGPLDGSTTTRIANLEHDRAQLLRKVDVLS QQLNNTHEHYAVSGSDRVCQQYGHHGHMHQMERAPLHNKVMIPAPFPHSQQQSPRGYFSSNFSQEHRFESQPAAYSCSMSASSHGYNTRGNGYGSHPQIH PRWQGGVNSNVEDNHPRRKVAAQRNRRLCRPIACGAPFIVCCACFELLKLSKKTLMQEKNKLKVRCGSCSVVLMLEFQSKKLMVSVCEETTESHVNIVDG SCENGANVCEHSGDVEVQSATLNESIPTEEQVLTCESEKKNEDHAFSSSSSSCSPSASSGEEESLEEMVVPREVSSPTDLSVKDDESPSMRTLQYQENLI DSRERMSLQRKGDRIIHTRDQTNDSRITSRQSSRKEEEFSFNDYVNMDSSVDFIDTSKSKPAPIHRWIETSFAGVFKKSLRDLAKPPQQAKNNSVNNKKA NVFVNGQPIHEQTLATAEKLAGLIHAGDYWYDIRAGFWGVMGQPCLGVIPPFIEEFNYPMPRNCAAGNTGVFVNGRELHQQDLELLCKRGLPPLEHKFYT LEIDGRLYDNDTGKELHGIGKLAPTVEKVKRGFGMRVPFESVVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	0	1
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10001811 [exp]	2.8	0.7658
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	4.0	0.8014
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	4.6	0.7809
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	4.7	0.7863
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	5.7	0.7526
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	10.0	0.7108
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	11.7	0.7574
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	13.7	0.7453
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	15.6	0.7488
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	16.4	0.7101

Compare expression of checked genes

Lus10003905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.