Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 439 / 4e-146 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 229 / 4e-66 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G58610 59 / 9e-09 PHD finger transcription factor, putative (.1) AT4G17330 56 / 8e-08 ATG2484-1 G2484-1 protein (.1) AT1G09320 55 / 1e-07 agenet domain-containing protein (.1) AT1G26540 55 / 2e-07 Agenet domain-containing protein (.1) AT1G06340 50 / 5e-07 Plant Tudor-like protein (.1) AT1G11420 53 / 6e-07 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G03300 48 / 2e-05 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007115 [exp] 429 / 2e-141 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 428 / 6e-141 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007793 [exp] 64 / 3e-10 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10004730 [exp] 62 / 1e-09 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10000615 [exp] 58 / 2e-08 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 58 / 2e-08 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 52 / 8e-07 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10027325 [exp] 50 / 8e-07 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10031429 [exp] 52 / 1e-06 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007500 [exp] 616 / 0 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.006G017400 [exp] 614 / 0 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.001G365800 [exp] 452 / 5e-151 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.008G119400 [exp] 290 / 9e-89 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 288 / 7e-88 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G077600 [exp] 65 / 1e-10 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.001G157300 [exp] 62 / 8e-10 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.005G011100 [exp] 54 / 2e-07 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 53 / 4e-07 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G072600 [exp] 52 / 1e-06 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10003906 pacid=23144323 polypeptide=Lus10003906 locus=Lus10003906.g ID=Lus10003906.BGIv1.0 annot-version=v1.0 ATGGATGTAGATAGTGTTACTTTTGTGGAATGGGAAGAACACATTATTTGTCATGAAAAAGGTAGCCGAGTGGTTCACTATTACTTGAAAGATGCTCTGG GCGAGTCTGTGCTCGCCGTGATAGGGACTGAGAGGAGTATTAGGCATATGATATACGTTGTTTCTGATGGGTTCTTGGAGATATATGGACCTAGTCTCTC TGTCGATGCTTCTACAAAGTGGAGAGCACGGCGAGAAGTTGTGGACTGGCTCGCAAGCATGGTGTCCAGTGAGCGTGGTGTTGTTGGTTCGGAGATTAAC GGGTACAACAATGACTTGGTGGGATCTTTTGAACCAGTTACTGGATTAGCTCCTTTTAATACTTATTTTCCCGAGCATGTGGCTCAGAGAAAACTGAAGG TCGAAAAAGCAAGCATTGACTGGTCTGGTGTTGCTGGGATCTGTGCTAAACAGCTGAAGCACTATCCATCATTTACAAGGGATGGTACTACCATACCAGT GCATTCGTTTGTGTTTGTCTTGGCCGAAGAAGTAGAACACTACCTTGGATACTTAGAAGATCTCTATGAAGACAAGAAAGGAAAGAAAAAGGTGAAAGTG CGTTGGTTTTACCTCAGCCAGGAATTGAATAATCTGATTCCTCAGCTGAATCTGCATCCTAGAGAAGTAGTCATTACATCTCATGTTCAGGTAATTAGTA CAGAGTGTATAGACAGTTGTACAACTGTCTTGACACCTTGGCATTTTGAGAAATATGTGGCAGATGCGCAGCCCTATTCATCATCATCGGCTGTCCATAT GTGCTTTAGGCAGCTCAAAAACAACAAAATCAAACCCTTTGCTCTTACGAAATTGAATGGATACAGTAATCAATCCATTGTTGCTTATCTTGCCAAGCAA AATGGCGAGTGCAATGATCTAAACAAATTACCATATGATGTTCATGTAAGAGTTGATGGCAAGAGAAAGAGAGGGGCCAAAGCTCAACAGGGCAGCCAAA TTGGTTACAATCTGACAGATGTTTCCACAGTCAACCAACCGTCGATGTTTCCCAAGCTGACGTTTCGGTTGGCAAGGCGTAGCATGAGCAGAAATTTTGT CGTGCCTCGAATCCTATTTCCTTTTACTGTCAAGGTGGATGAAAAGATAGAGTTGCTGTGTGAAGACAGTGGCATTAGAGGATGTTGGTTTAGGTGCAAG GTATTGGAGGCTACGAAGAGGCGTCTGAAAGTCCAGTACATTGATGTACAGGATGTGGAAAGCTCTTGCAATCTAGAGGAATGGGTTCCTACTACTAGAT CAGCTGCTCCTGATAAGCTGGGTATAAGATGTGACGGCCGCCAAAGAGTTCGGGCATGTCCTCCTGAAGATCTCAGGAACTCTAATTTTGAGGTTGGAGC AGCAGTTGATGCATGGTGGAGTGACGGTTGGTGGGAAGGTGTGGTTTCAGCAGCTGGAAAGGACCGTCTGCATGTTTATCTACCTGGTGAAAGCAAGTTC CTGAATGTTCCCCTGAAGCATGTCAGGAGCTCCAGGGACTGGATTCAAAACAGATGGGTCGATGTGAATCCCAAGGCAGATATACTCGATTATCTATCTT TAAATATCAGCTGCAACGGTAAACTGGGGACTCCTGTCTATGGCGGTGCTAGCAATTCAGAACAAAAGTATGTATCAGTATCCAGGGAACAGGAGGAAAG ATTTCCAAGTTCAGCTGTGTCGAAAGAAATGCTAAATTTTGAGGTGGTCAATCCAAGTAAAGACAATGAAAAGAATGATGAGATGACTGGTGACAAGTTT GTGCAGGCTGGAAAATGGTCTGAAGTCTTGAATCTGCATGAGAAAAGTGATGCTGTTCAAGTCCTCCCCAGTGCAGCAGGAGGGCATATTTTGACTGTAG AGTGTAGATGGAAGTTTGAAACTGATCGGGGTTGCTGTACATAA
AA sequence Show only first row Show all	>Lus10003906 pacid=23144323 polypeptide=Lus10003906 locus=Lus10003906.g ID=Lus10003906.BGIv1.0 annot-version=v1.0 MDVDSVTFVEWEEHIICHEKGSRVVHYYLKDALGESVLAVIGTERSIRHMIYVVSDGFLEIYGPSLSVDASTKWRARREVVDWLASMVSSERGVVGSEIN GYNNDLVGSFEPVTGLAPFNTYFPEHVAQRKLKVEKASIDWSGVAGICAKQLKHYPSFTRDGTTIPVHSFVFVLAEEVEHYLGYLEDLYEDKKGKKKVKV RWFYLSQELNNLIPQLNLHPREVVITSHVQVISTECIDSCTTVLTPWHFEKYVADAQPYSSSSAVHMCFRQLKNNKIKPFALTKLNGYSNQSIVAYLAKQ NGECNDLNKLPYDVHVRVDGKRKRGAKAQQGSQIGYNLTDVSTVNQPSMFPKLTFRLARRSMSRNFVVPRILFPFTVKVDEKIELLCEDSGIRGCWFRCK VLEATKRRLKVQYIDVQDVESSCNLEEWVPTTRSAAPDKLGIRCDGRQRVRACPPEDLRNSNFEVGAAVDAWWSDGWWEGVVSAAGKDRLHVYLPGESKF LNVPLKHVRSSRDWIQNRWVDVNPKADILDYLSLNISCNGKLGTPVYGGASNSEQKYVSVSREQEERFPSSAVSKEMLNFEVVNPSKDNEKNDEMTGDKF VQAGKWSEVLNLHEKSDAVQVLPSAAGGHILTVECRWKFETDRGCCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	0	1
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	5.9	0.8518
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	6.9	0.8362
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	7.9	0.8583
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	10.6	0.8481
AT4G32910			unknown protein		Lus10038723 [exp]	13.6	0.8577
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	16.8	0.8542
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	19.9	0.8519
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	27.1	0.8483
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	29.7	0.8388
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	31.4	0.8396

Compare expression of checked genes

Lus10003906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.