Plant FIBer expression Database

Lus10003907 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16410 119 / 5e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G017500
[exp]
131 / 1e-38 AT4G16410 156 / 2e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05421 DUF751 Protein of unknown function (DUF751)
Representative CDS sequence
>Lus10003907 pacid=23144348 polypeptide=Lus10003907 locus=Lus10003907.g ID=Lus10003907.BGIv1.0 annot-version=v1.0
ATGAAGGCCATATCTGCAGTCCAATCCTACAACCAGTTCCTTCACCAAAAGACAACTCCTTTCCCTCTACAAAGCCATTCCCAGCGTCTCCTTTCCGTCA
ATACCCATTTTCCCTCAAGCTATCCTCTGAGAAGAAACCTTGTTCTCACACAAAGCAAAAATCCTCGTGAAGATTCTGATGTTGATTGGGAGCAGAAGGC
ATCAAGATCCACGGCGCTACTGATGAGAAGTGCAGCAGCAGCAGCAGCTGGGGCATCGATTGGGTTGGCGGTGTTTTGGATGTTCGTTGATGAGCATAGC
AACAAGGCGCTGGCTTTGGGGCCAGGAGGCCCATTCATGGAAGAAGAGTTTTGGGACAATGTGAGGAGGTATGCCCTTTACGCACTCACTGTCAGCACTG
GTGCGCTTTACACTATCCTGCTACCGATTGTGGAGCTGCTCAAGAACCCTATCTCTGCAATTTTGGTATTGGTTATTCTAGTTGGGGGGTTTTACATTGT
GTCACAGGTCGTCTCCGCCATGGTTGGTCTCTCTGATTTCTCCTACTCCTATGCTTATTAA
AA sequence
>Lus10003907 pacid=23144348 polypeptide=Lus10003907 locus=Lus10003907.g ID=Lus10003907.BGIv1.0 annot-version=v1.0
MKAISAVQSYNQFLHQKTTPFPLQSHSQRLLSVNTHFPSSYPLRRNLVLTQSKNPREDSDVDWEQKASRSTALLMRSAAAAAAGASIGLAVFWMFVDEHS
NKALALGPGGPFMEEEFWDNVRRYALYALTVSTGALYTILLPIVELLKNPISAILVLVILVGGFYIVSQVVSAMVGLSDFSYSYAY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16410 unknown protein Lus10003907
[exp]
0 1
AT1G52230 PSAH2, PSAH-2, ... PHOTOSYSTEM I SUBUNIT H-2, pho... Lus10035864
[exp]
2.6 0.9790
AT1G52230 PSAH2, PSAH-2, ... PHOTOSYSTEM I SUBUNIT H-2, pho... Lus10025798
[exp]
4.7 0.9760
AT1G55670 PSAG photosystem I subunit G (.1) Lus10041966
[exp]
4.9 0.9637
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Lus10011913
[exp]
6.0 0.9710
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Lus10022846
[exp]
8.1 0.9618
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Lus10002084
[exp]
8.9 0.9629
AT4G36020 CSDP1 cold shock domain protein 1 (.... Lus10028073
[exp]
9.2 0.9415
AT3G48420 Haloacid dehalogenase-like hyd... Lus10033034
[exp]
10.9 0.9496
AT5G40950 RPL27 ribosomal protein large subuni... Lus10012538
[exp]
11.0 0.9599
AT1G30380 PSAK photosystem I subunit K (.1) Lus10012086
[exp]
11.5 0.9608

Lus10003907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.