Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03370 674 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 405 / 3e-125 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G22610 79 / 1e-14 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G73580 72 / 2e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61300 77 / 4e-14 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G59660 74 / 4e-13 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G53590 73 / 6e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 67 / 2e-12 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G17980 66 / 3e-12 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 70 / 5e-12 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001915 [exp] 1074 / 0 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 431 / 1e-134 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 426 / 4e-133 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001538 [exp] 77 / 7e-14 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10027067 [exp] 76 / 9e-14 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10009460 [exp] 76 / 9e-14 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10017629 [exp] 69 / 4e-13 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10025600 [exp] 73 / 5e-13 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10033585 [exp] 68 / 8e-13 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003200 [exp] 769 / 0 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 743 / 0 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.015G083500 [exp] 444 / 5e-140 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.010G110900 [exp] 76 / 1e-15 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.004G089500 [exp] 74 / 6e-15 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G080000 [exp] 79 / 2e-14 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 77 / 5e-14 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.008G131500 [exp] 71 / 6e-14 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G379800 [exp] 76 / 1e-13 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G105400 [exp] 74 / 5e-13 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10003910 pacid=23144316 polypeptide=Lus10003910 locus=Lus10003910.g ID=Lus10003910.BGIv1.0 annot-version=v1.0 ATGAAGCTTGTGGTTCGAGTAATAGAAGGCAGGAATTTGCCGGCAATGGATCCAAATGGGTTGAGTGATCCTTATGTGAAGTTGCAGCTGGGAAAGCAGA GGTTCAAAACTAAAGTGGTGAAGAAAAACTTGAACCCAAGTTGGGGAGAGGAGTTCAGTTTCAAGGTTGAGGACTTGAAGGAGGAGCTTGTGATTTCCGT GTTGGATGAGGATAAGTATTTCAATGATGACTTTGTTGGCCAGCTGAAAGTTCCAGTCTCTCAAGTTTTTGATGCTGACAATAAGTCTCTTGGCACTTGC TGGTACTCTCTCCAACCCAGAACTAAGAAGTCCAAGAATAAGGAATGTGGTGAGATTCTGTTAACCATTCTGTTTTCACAAAACAACGCATTTCTGGATA TGGACGACGAGCATGATCAGTTGTCAAAAATTAAGAAGAATGGAGAATCTGGAACTGAATCATCTTCTAGATCATTTACTGGAGGATCAAACGTTTCAAT ATCTTCATCAACATTACAAGAAGTTACGTCAGAAAAGTTGCATCCACCGAGGACTTTTGCTGAGAGAATTGCTCAAATGTTCAACAAAAATTTGGATACA ACGTCAACAGGTACAAGTAAAAGTATAGATGTTTCCGAGCCTCAGGAAGCCATGGAGCCTGAGGTCCCTGATGACACATTTGAGGATCAGCCATCCTCTG GTTGCTTCAATGAGTTTATGAAAGAAATCGAATCTAGAGATGTGGGGGATGAAATACCAAGCAATCTAGCCGGAGGAGTCCTTGTTGATCAAGTATATAC AATCACACCTGAGGAATTAAACTCCATTCTTTTCTCACCTAACTCGAGTTTTCCCAAATCAGTGGCAGAAGGCCAGGGTAACACTGAACAGCTGTTTGGT ACTTGGAGGTTTGAGACTGGCAGTGACAGCTTGAAAAGAGCGGTGACTTATATTAAGGCTCCAAGTAAATTAATTAAGGCTGTGAAAGCCACCGAGGAGC AAACATATCTGAAAGCTGACGGAAAGTTCTTTGTCGTCTTAGCCAGTGTGAGCACTCCGGATGTTCCTTATGGAAGCTGCTTTAGGGTTGAACTGCTTTA CTGCATCATGCCAGGCCCCAAGGTGACATCCGGAGAGCAGACTTCCCAGCTGACCATATCTTGGCGAATGAACTTCTTGCAGAGTACTATGATGAAAGGA ATGATAGAGAATGGGGCACGGCAAGGTCTAAAGGACAGCTTTGAACAATTTGCATCTCTTTTGTCTCAACAGGTGAAACCAGTTGATTTGAAGGACATGG CATCCAGTAAGGAACAGGTTTTAGCATCGCTGCAGATAGAATCCCAATCAGATTGGAAGTTGGCTTTACAATATTTCAGCAATTTTACAGTAGTTTCTAC AGTCGTTATTGGGGTCTATGTACTGATCCATATATGGCTGGCGATGCCTAGCGCAATGCAAGGGCTGGAGTTCATTGGGCTGGATTTACCAGATTCTATA GGTGAAGTTATTGTGTGCGGTGTCCTAGTGCTTCAATGTGCAAGGGTACTGGAATTGCTTTCCCGCTTCATGCAGGCCAGAGTGCGAAAGGGCAGTGATC ACGGAGTCAAAGCACAAGGGGATGGGTGGGTGCTCACTGTTGCATTGATGGAGGGAAGTAATCTGCCTACTGTTGATTCAAGTGGCTTCTGTGATCCATC TAATATATTGGATCTTGCTGATGTGTGGGTGCCTCTTAAAGGGAAGTTAGTACAAGCTTGTCAAGCTAAGCTGCACCTGAGAATTTTCTTGAACAATACA AAAGGTAACAATGTTGTAAAGGAGTACTTAAGCAAGATGGAAAAAGAAGTGGGTACGAAGATAAATGTCCGTTCTCCTCAAACCAACTCTGCCTTTCAGA AGCTTTTTGGACTTCCGTTGGAAGAATTTCTCATCAACGACTTCACCTGCCACTTGAGACGAAAAATGCCCTTGCAGGGTCGGCTATTTTTATCGGCAAG AATAATAGGATTCCACTCTAACTTGTTTGGCCACAAAACTAAATTTTTCTTCCTTTGGGAGGACATAGAGGATATTCAAGTTTCCGCCCCTAGTCTCGCC TCAATGGGCAGTCCCCTTGTTGTCCTAACTCTCCGACGGGCCCGGGGTATGGATGCTAGGCATGGTGCGAAAAGCATGGATGCCGAGGGAAGGCTTAAAT TCCAGTTCCATTCATTTGTGTCATTCAATGTTGCACATAGAACAATCATGGCATTATGGAAGGCTAGATCACTAAGTCCCGAACAGAAGGTACGTATTGT TGAAGAAGAATCAGAGACCAAAATCTTGCAGTCTGAAGAGTCTGGGTCCTACTTGGGTACTGAGGACGTCAGCATGTCAGAGGTTTATTCTTCTTCCCTT TCTGTGCCAACCAATTTCTCGATGGAGCTATTTGGTGGCGGTGACTTGGAGCGCAAAATCATGGAGAAAGCTGGTAGTCTTAGCTATTCTTACACACCGT GGGAGTCAGAGAAAGCCGATGTGTACCAGAGGCAAATTTATTTCAGATTTGATAAGAGCATATCACGCTATAGGGGAGAGGTAACTAGCACACAACAGAA GTATTTACTTGCTGATAAAAAAGGTTGGGTTGTAGAAGAAGTCATGACACTTCATGGTGTACCACTTGGCGACTATTTCAACCTTCACCTGAAATACCAG ATTGAGGATTCACCCATAAGTCCGAAAAGCTGCAATGTGAAAGTATTCTGTGGAATTGAATGGCTGAAAAGTACCAAACATCCAAAGCGAATGACAAAGA ACATCTATTCGAATCTTGAAGATCGGTTGAAAGTGATGTTCAGTGTTCTTGAGGAGTATACAAATAGATAG
AA sequence Show only first row Show all	>Lus10003910 pacid=23144316 polypeptide=Lus10003910 locus=Lus10003910.g ID=Lus10003910.BGIv1.0 annot-version=v1.0 MKLVVRVIEGRNLPAMDPNGLSDPYVKLQLGKQRFKTKVVKKNLNPSWGEEFSFKVEDLKEELVISVLDEDKYFNDDFVGQLKVPVSQVFDADNKSLGTC WYSLQPRTKKSKNKECGEILLTILFSQNNAFLDMDDEHDQLSKIKKNGESGTESSSRSFTGGSNVSISSSTLQEVTSEKLHPPRTFAERIAQMFNKNLDT TSTGTSKSIDVSEPQEAMEPEVPDDTFEDQPSSGCFNEFMKEIESRDVGDEIPSNLAGGVLVDQVYTITPEELNSILFSPNSSFPKSVAEGQGNTEQLFG TWRFETGSDSLKRAVTYIKAPSKLIKAVKATEEQTYLKADGKFFVVLASVSTPDVPYGSCFRVELLYCIMPGPKVTSGEQTSQLTISWRMNFLQSTMMKG MIENGARQGLKDSFEQFASLLSQQVKPVDLKDMASSKEQVLASLQIESQSDWKLALQYFSNFTVVSTVVIGVYVLIHIWLAMPSAMQGLEFIGLDLPDSI GEVIVCGVLVLQCARVLELLSRFMQARVRKGSDHGVKAQGDGWVLTVALMEGSNLPTVDSSGFCDPSNILDLADVWVPLKGKLVQACQAKLHLRIFLNNT KGNNVVKEYLSKMEKEVGTKINVRSPQTNSAFQKLFGLPLEEFLINDFTCHLRRKMPLQGRLFLSARIIGFHSNLFGHKTKFFFLWEDIEDIQVSAPSLA SMGSPLVVLTLRRARGMDARHGAKSMDAEGRLKFQFHSFVSFNVAHRTIMALWKARSLSPEQKVRIVEEESETKILQSEESGSYLGTEDVSMSEVYSSSL SVPTNFSMELFGGGDLERKIMEKAGSLSYSYTPWESEKADVYQRQIYFRFDKSISRYRGEVTSTQQKYLLADKKGWVVEEVMTLHGVPLGDYFNLHLKYQ IEDSPISPKSCNVKVFCGIEWLKSTKHPKRMTKNIYSNLEDRLKVMFSVLEEYTNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	0	1
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	1.4	0.8979
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	6.6	0.8017
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	7.1	0.7960
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	7.5	0.7758
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	7.7	0.7986
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	12.5	0.7968
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Lus10015959 [exp]	14.5	0.7663
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	16.6	0.7694
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	16.9	0.7771
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	17.3	0.7674

Compare expression of checked genes

Lus10003910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.