Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14180 66 / 2e-12 ATPRD1 putative recombination initiation defect 1 (.1) AT1G06660 43 / 9e-05 JASON JASON, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021481 [exp] 153 / 3e-42 AT4G14180 904 / 0.0 putative recombination initiation defect 1 (.1) Lus10002081 [exp] 113 / 5e-31 AT4G14180 53 / 3e-08 putative recombination initiation defect 1 (.1) Lus10001051 [exp] 100 / 5e-24 AT1G06660 283 / 6e-90 JASON, unknown protein Lus10020732 [exp] 79 / 1e-16 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10002132 [exp] 64 / 1e-12 AT1G79440 56 / 9e-10 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10027384 [exp] 60 / 4e-12 AT1G17350 51 / 1e-09 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10001417 [exp] 52 / 2e-07 AT1G06660 228 / 3e-69 JASON, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057000 [exp] 48 / 3e-06 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.002G232700 [exp] 47 / 7e-06 AT4G14180 1021 / 0.0 putative recombination initiation defect 1 (.1) Potri.005G205700 [exp] 45 / 3e-05 AT1G06660 275 / 6e-87 JASON, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003912 pacid=23144329 polypeptide=Lus10003912 locus=Lus10003912.g ID=Lus10003912.BGIv1.0 annot-version=v1.0 ATGCAAAGAATGTTATATATTCAAGCATTTCATATATCTAGGGTAGTTAAACAACAACCTATCTTTGTGTATGTATTACACTGTACGAAACAGGAAGCAT CGTCTAGCTGCTTACTCACGGTGGCGCTGTCGCAGCCCCGATTCCTCGAAATCTTGCTCACTTTCCACCCTCACTTCCTCGTCTCCCCTCTCCTCCATGC TCTCTCCCTCTTCCCCGACCCGTCCATCGCTTCTCTCCTCTTCCACCTTATCTCCACCCTACCCTCCTCTGCTGCCGCCATAGCTCCTCACTTCCTCGCA GGCTTCGCTGATATCGTCTCTTCCTCTTCTGCGGGCTGGACTCCCGTCCACCTCCACATCTTTCTTACGTTTTCACTTCATTTTGCAGAGGAAGAAGATT ATCCAGCTACTTATGATAACAAGGGAAAACTATCTTGGTCGTCTCCCCGGACTCAGAAAGAGCTTAGGGATGAGACAAGTTTTCTTAAAGCTTGGGGTAC TTTGCTTGAGACGCCGGCTGAACTCCGGGGAGCATCTAAGAATCTAAAGAGTTCGCCACCTGCTTTGAATGAGTACGTTGCTTTTTCAGGTACCCGCCTG CTCAGTTCTCCTCTTTATTCCCAAAATTCCATTCCATTTCTTAAATCCCGGTCTGATCGACTCGGGATCGTTAGTGGCAAAGACGGTGGTAGCTACCGGG GTGGTGACTACTGA
AA sequence Show only first row Show all	>Lus10003912 pacid=23144329 polypeptide=Lus10003912 locus=Lus10003912.g ID=Lus10003912.BGIv1.0 annot-version=v1.0 MQRMLYIQAFHISRVVKQQPIFVYVLHCTKQEASSSCLLTVALSQPRFLEILLTFHPHFLVSPLLHALSLFPDPSIASLLFHLISTLPSSAAAIAPHFLA GFADIVSSSSAGWTPVHLHIFLTFSLHFAEEEDYPATYDNKGKLSWSSPRTQKELRDETSFLKAWGTLLETPAELRGASKNLKSSPPALNEYVAFSGTRL LSSPLYSQNSIPFLKSRSDRLGIVSGKDGGSYRGGDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14180		ATPRD1	putative recombination initiat...		Lus10003912 [exp]	0	1
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	11.9	0.8598
AT5G14850			Alg9-like mannosyltransferase ...		Lus10034759 [exp]	15.5	0.7857
					Lus10004065 [exp]	19.4	0.7722
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	25.7	0.8308
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	39.2	0.7934
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	41.9	0.8023
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	55.8	0.7997
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	62.2	0.7553
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10032149 [exp]	82.0	0.7318
AT2G24960			unknown protein		Lus10026250 [exp]	88.2	0.7679

Compare expression of checked genes

Lus10003912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.