Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44500 706 / 0 O-fucosyltransferase family protein (.1.2) AT3G07900 644 / 0 O-fucosyltransferase family protein (.1) AT5G63390 545 / 0 O-fucosyltransferase family protein (.1) AT1G76270 257 / 2e-78 O-fucosyltransferase family protein (.1) AT5G64600 253 / 3e-77 O-fucosyltransferase family protein (.1) AT5G35570 256 / 4e-77 O-fucosyltransferase family protein (.1) AT1G20550 250 / 7e-76 O-fucosyltransferase family protein (.1) AT1G22460 246 / 2e-74 O-fucosyltransferase family protein (.1) AT5G01100 247 / 7e-74 O-fucosyltransferase family protein (.1) AT4G24530 242 / 3e-73 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037475 [exp] 809 / 0 AT2G44500 672 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10008719 [exp] 254 / 1e-77 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 246 / 8e-75 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 248 / 4e-74 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 247 / 6e-74 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 246 / 3e-73 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 245 / 5e-73 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 242 / 8e-73 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 239 / 5e-72 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227000 [exp] 737 / 0 AT2G44500 754 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.009G022500 [exp] 717 / 0 AT2G44500 744 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.015G092600 [exp] 544 / 0 AT5G63390 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 257 / 6e-79 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 262 / 1e-78 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 251 / 2e-76 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 248 / 2e-75 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 251 / 3e-75 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 246 / 3e-74 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 244 / 1e-73 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003914 pacid=23166308 polypeptide=Lus10003914 locus=Lus10003914.g ID=Lus10003914.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAAGTGGCGTACATCTCCGTTCCGTCACAGATAATCAACTCCCTCTCTTCCTCCTCTTTACAATCTCTCCTCCTCTCCCCCAAGAAGTCGT CGTCCTCTGCCTCCTCCTCAAGAAACAAATCCCTAGCAGTTCTTATCAGAAGCCCCAAGCTGTGGTGTTTGGCTCTAATCCTCTGCGGCTTTCTTGGACT GCTCAACCTCCTCTCCCTCACCGATCCCCTGCTCCTCCCTTTCCACTTCCCTTGCTCCATCTCGAATCAAGACCACCGGCAAGCCGGTTTCCCAGGCGAG AATGCAGTTTCCGGTTCTTTTCTTGTTAGTAGTACTAGTAGTAGTAATGTGATGAGGAGTAATGTTTCGGAGTCGGAATCGATGTTCTGGAAGCAGCCGG ACGGGATGGGGTACGCGCCGTGCCTATGGTTCACCAGGGAGTATAAGAGAGTCAGTGAAGGTTTTCTGAAGGAGCGGAGTAAGTATCTGCTGGTGGTGGT TTCAGGCGGGATGAATCAGCAGCGGAATCAGATCGTGGATGCAGTCGTCATCGCCAGGATCCTCGGCGCTACTCTGGTGGTTCCTATCTTGCAAGTCAAC GTCATTTGGGGCGACGAAAGTGAGTTCTCTGACATATTCGATTTGGAGCATTTCAAGAGAGTGCTTGCAGGCGATGTAAGGATCGTCTCGTCGTTGCCGT CGACGCACATAATGACGAGGCCGGTTGAAGAGCGGCGAACTCCTCTTGACGCTTCTCCTCAATGGATCCGTTCCCGCTATCTCAAACGTCTAAAGAGGGA CGGGGTATTGCTTCTGCGTGGTTTGGATTCAAGGCTGTCCAAGGATCTTCCTTCCGATCTGCAGAAACTGCGATGCAAGGTTGCATTCAGTGCCTTAAGG TTTGCTCCATCGATTATGGGACTAGGGAACAAGATTGCTGACAGGATGGAGAGTAAAGGTCCATACATTGCACTTCATCTCCGGATGGAGAAAGACGTGT GGGTTAGAACAGGCTGCCTTCCTGGATTGAGCTCCGAGTACGACGAAATGATTGCCAACGAGAGGCAACGACGACCCGAGCTACTCACCGCCAGATCAAA CATGACTTACCACGAACGGAAGCTCGCTGGATTGTGTCCTTTGAATGCCATGGAGGTCGCCAGGCTGCTGAAAGCACTTGGAGCTCCAAAGGATGCCAGG GTATTCTGGGCCGGAGGGGAACCACTCGGAGGTCCTGAAGCATTATCACCTATTACAAGGGAGTTCCCACATTTCTTCAACAAGCGTGATCTAGCATTAC CCGGTGAGCTCGAACCTTATGCAAAGAAAGCTTCTGTAATGGCTGCCATCGACTTCATAGTGTCCGAGAGAAGCGAAGTGTTCATGCCGTCTCATGGAGG AAACATGGGGCATGCCATGCAAGGGCACCGTGCATTTGCAGGGCACAAAAAGTACATAACACCGAATAAAAGACACATGCTTCCTTACTTCCTTGATGCT TCTCTACCTGAGTCAGAGTTCAACAGAGTTATCAGAGAATTACACAGTGAGTCTTTGGGACAGCCCGAACTCAGAAGTAGTAAAGCCGGAAGGGATGTTA CGAAGTTTCCGATTCCGGAATGCATGTGCAATACTACTTCGTCACACTGA
AA sequence Show only first row Show all	>Lus10003914 pacid=23166308 polypeptide=Lus10003914 locus=Lus10003914.g ID=Lus10003914.BGIv1.0 annot-version=v1.0 MAKKVAYISVPSQIINSLSSSSLQSLLLSPKKSSSSASSSRNKSLAVLIRSPKLWCLALILCGFLGLLNLLSLTDPLLLPFHFPCSISNQDHRQAGFPGE NAVSGSFLVSSTSSSNVMRSNVSESESMFWKQPDGMGYAPCLWFTREYKRVSEGFLKERSKYLLVVVSGGMNQQRNQIVDAVVIARILGATLVVPILQVN VIWGDESEFSDIFDLEHFKRVLAGDVRIVSSLPSTHIMTRPVEERRTPLDASPQWIRSRYLKRLKRDGVLLLRGLDSRLSKDLPSDLQKLRCKVAFSALR FAPSIMGLGNKIADRMESKGPYIALHLRMEKDVWVRTGCLPGLSSEYDEMIANERQRRPELLTARSNMTYHERKLAGLCPLNAMEVARLLKALGAPKDAR VFWAGGEPLGGPEALSPITREFPHFFNKRDLALPGELEPYAKKASVMAAIDFIVSERSEVFMPSHGGNMGHAMQGHRAFAGHKKYITPNKRHMLPYFLDA SLPESEFNRVIRELHSESLGQPELRSSKAGRDVTKFPIPECMCNTTSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	0	1
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	2.8	0.7948
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	3.5	0.7804
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	4.9	0.7613
AT1G78110			unknown protein		Lus10012052 [exp]	10.6	0.7361
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	14.7	0.7516
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	18.2	0.7608
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	18.7	0.7450
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	22.0	0.7585
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	22.2	0.7390
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	23.6	0.7359

Compare expression of checked genes

Lus10003914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.