Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 617 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 513 / 4e-179 BGLU16 beta glucosidase 16 (.1.2.3) AT5G44640 508 / 4e-177 BGLU13 beta glucosidase 13 (.1) AT5G42260 505 / 3e-176 BGLU12 beta glucosidase 12 (.1) AT2G44450 499 / 6e-174 BGLU15 beta glucosidase 15 (.1) AT2G25630 476 / 9e-165 BGLU14 beta glucosidase 14 (.1) AT3G18080 461 / 2e-158 BGLU44 B-S glucosidase 44 (.1) AT1G47600 460 / 2e-158 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT1G51470 458 / 1e-157 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT5G54570 458 / 3e-157 BGLU41 beta glucosidase 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037473 [exp] 950 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 649 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 596 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 596 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 548 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 536 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 532 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 530 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10024065 [exp] 522 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227200 [exp] 680 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 660 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 570 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 565 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G223800 [exp] 542 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223900 [exp] 542 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 542 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G224000 [exp] 540 / 0 AT3G60120 526 / 0.0 beta glucosidase 27 (.1) Potri.001G223708 [exp] 539 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223712 [exp] 539 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10003915 pacid=23166313 polypeptide=Lus10003915 locus=Lus10003915.g ID=Lus10003915.BGIv1.0 annot-version=v1.0 ATGAGTTGCTACCTGATTCTCCTCCTCTTTCTTCAGCTTGCGGTGACCGTCGCCAGCATCCGGTCGGTGCCGCCGAATCCAAGTAAGCTGCTGCCTTTCA CTCGAGCCAGCTTTCCAGATGGCTTCATTTTCGGTGCGGGAACTGCTGCTTACCAGTCTGAAGGAGGTGCTTTTTCGGATGGCAGGGGACTTAGTGTCTG GGATACCTTTGTCAAGCAACATCCAGAAAAAATCGCGGATCATAGCAACGGAGATTTAGCCGACGACTTCTATAATAAGTACAGAGAAGACATAAAGCTG GTGAAGAAGATTGGGCTGGACTCGTTCAGATTCTCCATATCCTGGAGCAGGATACTGCCAAAGGGCACACTGAGTGGGGGAGTGAACCAACTTGGCATCA AGTTCTACAACGACCTCATTGATGAGATCCTTGCCAATGGGATAAAACCGTTTGTGACACTGTGGCACTTCGATCTCCCACAAGCTCTCGAAGACAAATA CGGTGGATTCTTGAGCCCCAAGATCATGGAGGATTTTGTGGCGTACGCCGACTTGTGCTTCAAGACATTCGGGGACAGGGTGAAGCTATGGGTGACGCTC AACGAGCCTAACGGCTACGCGATGAACGCTTACAACTTCGGCAACTTCGCACCCGGGCGATGTTCCAGCTACGTCGGGAACTGCACCGCGGGCAACTCCG GGACGGAGCCGTATATCGTGGGGCATCATTTGTTGATGTGCCACGCTTGGGCGGTAAAGTTGTACAGAGAAAAATACCAAAAGGTCCAGAAGGGAGAGAT TGGGATGACGATCGTGACGCATTGGTTCACTCCCAAATACGATACCGTTTCTGGCCGCATTGCCGCCTCTCGAGCCATCGACTTCTTCTTCGGATGGTTC GCTAACCCAATCACGTACGGGGAGTATCCGGCGAGCATGGTGAAGTTGGTTGGGAAGAGGCTGCCGAGATTCACGGAAGAGGAGAAAAAGATGGTCAAGG GGTCTTACGACTTCATGGCCGTGAATTACTACACTACCCAATACGCCGAACAAGCTCCTCCGTTCACCAGCCGCGCCGCCGCCTCTCTCAACCTCAGTTA CTCTTCCGACCGCCGCCTCATTTTGACCTCTGACAAGAACGGCGTCCCCATTGGCACACCGACCGGTTTGAGTTGGTTGTTCATCTATCCGAAAGGGTTC GAAGAATTCCTAATCTATGTCAAGAACACTTTCGATAATCCGACAATATATATCACTGAGAATGGATTGGCAGACAAGACAGATTTGCCACTTGAAATGG CGATCAAGGATGCATTGAGAATCAGATACCACAGCCTCCACCTCCAGTCTCTTTTGGCAGCCATCAAGGAGGGGGTGAAGGTGAAGGGTTACTACGTGTG GTGTTTCCTGGACGACTTCGAATGGGATGCCGGCTTGTCGATCAGATTCGGGATCACTTACGTCGATTTCGCACACAATTTCAGACGATACCTCAAATAC TCTGCATATTGGTTCAAGATGATGCTGCTTACCAAGTGA
AA sequence Show only first row Show all	>Lus10003915 pacid=23166313 polypeptide=Lus10003915 locus=Lus10003915.g ID=Lus10003915.BGIv1.0 annot-version=v1.0 MSCYLILLLFLQLAVTVASIRSVPPNPSKLLPFTRASFPDGFIFGAGTAAYQSEGGAFSDGRGLSVWDTFVKQHPEKIADHSNGDLADDFYNKYREDIKL VKKIGLDSFRFSISWSRILPKGTLSGGVNQLGIKFYNDLIDEILANGIKPFVTLWHFDLPQALEDKYGGFLSPKIMEDFVAYADLCFKTFGDRVKLWVTL NEPNGYAMNAYNFGNFAPGRCSSYVGNCTAGNSGTEPYIVGHHLLMCHAWAVKLYREKYQKVQKGEIGMTIVTHWFTPKYDTVSGRIAASRAIDFFFGWF ANPITYGEYPASMVKLVGKRLPRFTEEEKKMVKGSYDFMAVNYYTTQYAEQAPPFTSRAAASLNLSYSSDRRLILTSDKNGVPIGTPTGLSWLFIYPKGF EEFLIYVKNTFDNPTIYITENGLADKTDLPLEMAIKDALRIRYHSLHLQSLLAAIKEGVKVKGYYVWCFLDDFEWDAGLSIRFGITYVDFAHNFRRYLKY SAYWFKMMLLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	0	1
AT4G31340			myosin heavy chain-related (.1...		Lus10020166 [exp]	1.7	0.7638
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	5.0	0.6894
AT1G21590			Protein kinase protein with ad...		Lus10023981 [exp]	6.5	0.6977
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	8.7	0.7399
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	9.5	0.6587
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	13.3	0.6924
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	19.8	0.6483
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	30.7	0.6875
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	33.5	0.6506
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	40.1	0.6665

Compare expression of checked genes

Lus10003915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.