Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31960 225 / 4e-67 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 223 / 3e-66 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT5G13000 218 / 2e-64 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G13680 173 / 8e-49 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G59100 123 / 1e-31 ATGSL11 glucan synthase-like 11 (.1) AT5G36870 114 / 2e-28 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT1G06490 108 / 2e-26 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G14570 104 / 3e-25 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G14780 98 / 2e-23 unknown protein AT3G07160 57 / 6e-09 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037471 [exp] 362 / 4e-127 AT2G31960 258 / 2e-78 glucan synthase-like 3 (.1.2) Lus10037469 [exp] 248 / 5e-75 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 246 / 3e-74 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 218 / 1e-64 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10013744 [exp] 218 / 1e-64 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10002097 [exp] 167 / 5e-47 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033482 [exp] 145 / 5e-39 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020751 [exp] 118 / 6e-30 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1) Lus10042478 [exp] 118 / 1e-29 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230000 [exp] 223 / 3e-66 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 218 / 1e-64 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 218 / 2e-64 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 175 / 2e-49 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.005G203500 [exp] 115 / 9e-29 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 115 / 1e-28 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 95 / 1e-21 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G011900 [exp] 60 / 5e-10 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.015G089300 [exp] 55 / 3e-08 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.015G089500 [exp] 48 / 2e-06 AT2G36850 337 / 1e-106 CHORUS, glucan synthase-like 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003917 pacid=23166333 polypeptide=Lus10003917 locus=Lus10003917.g ID=Lus10003917.BGIv1.0 annot-version=v1.0 ATGTTGATGACTAACTCAATATCTCCGATTCTCCATGCTGCTAAAGAAGTAGAGCTTAGTAACCCCAGAGTTGCTTATCTATGCCGGTTCTATGCTTTTG AGAAAGCTCACAAGTTAGATCCTAAAGCCAGCGGACGCGGTGTTCATCGATTCAGAACTGCACTTCTACGACGTCTCGAAAAGGAAAATGAGACCACTCG GCGATCAATGTCACCGAGAAGTGATGCTCGCGAAATGCTGGAATTTTACAGTGATTACTTCGACAAGTACATCCAAGCTATGAAAAGTGCTGCTGATCAC AAGCATGATCGTGCAAAGCTTACTAAAGCATATCAAACTGCAGCAGTCCTCTTTGAGGTTCTCAAGGCTGTCAGCCTAACAGAAGAACCTTATCCTGAAG AGATTCTGGAAGCTCAAACCAAAGCTGAAGAGGAAAGAGAGATATGTGTCCCTTACAGCAAAACTCAGATTCAAGCTGCTGTTTCTGCACTGAAGAACTC AGAAGGTGATAAGAAAAAGGAAAATGAAGAGATATTAGATTGGCGTCAAGCTGTGTTTGGATTTCAGAAAGATGATGTGGATGTGGCCCTGGCCGAGTGG ACTCGCATCGGAGTGGCCCTCGCTGAGAGGGCCAGCACAAGTGCCCAACCGTCGCAATCTGCCGCACCAGTGCCAGCCGCAAATGACACTGCAGCCGCAG CAATGCCACCACCACCACCACCACTCTACCAGTGCCCACTACCAGCAGAGTCATCATGGTCATATTTTTTCGAACTAGTAGAGGTTGATCCATCTTAG
AA sequence Show only first row Show all	>Lus10003917 pacid=23166333 polypeptide=Lus10003917 locus=Lus10003917.g ID=Lus10003917.BGIv1.0 annot-version=v1.0 MLMTNSISPILHAAKEVELSNPRVAYLCRFYAFEKAHKLDPKASGRGVHRFRTALLRRLEKENETTRRSMSPRSDAREMLEFYSDYFDKYIQAMKSAADH KHDRAKLTKAYQTAAVLFEVLKAVSLTEEPYPEEILEAQTKAEEEREICVPYSKTQIQAAVSALKNSEGDKKKENEEILDWRQAVFGFQKDDVDVALAEW TRIGVALAERASTSAQPSQSAAPVPAANDTAAAAMPPPPPPLYQCPLPAESSWSYFFELVEVDPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	0	1
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	2.0	0.9045
AT2G38890			unknown protein		Lus10023488 [exp]	2.8	0.8115
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	3.2	0.8789
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	3.9	0.8352
AT5G66440			unknown protein		Lus10040435 [exp]	6.0	0.7989
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	7.0	0.8244
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	7.1	0.8383
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	7.3	0.8331
AT2G33580			Protein kinase superfamily pro...		Lus10022490 [exp]	8.1	0.7338
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	8.9	0.8354

Compare expression of checked genes

Lus10003917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.