Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32840 130 / 3e-35 proline-rich family protein (.1.2) AT1G04930 75 / 4e-15 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037470 [exp] 275 / 8e-89 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229800 [exp] 164 / 1e-47 AT2G32840 136 / 2e-37 proline-rich family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003918 pacid=23166335 polypeptide=Lus10003918 locus=Lus10003918.g ID=Lus10003918.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTACACCCACCAACACTAATGCCGCCACCGCCACCGCACGACCGGCTGCCGGAAGACCCCAGCTTTCTCATCCATCTCCATACCCAATTT ACCACCAGCAAGTCCAACAGCAGCAGCACTACCTCAACACTACCAGCAACAACAACAGCATCAGATCCCAAACCCTGATTCCCACCTCCAATACCCCGCA GCCGCCGCCTGGAGGGATTCTGTATCCCGTCGCTTCCTCCGGCCGCGGCTTCATTCCTCCTCCGGTGCCGCCGCCGCCCACCACCCGTCCTTCCTCCTCC GATTACTCCCGAAGCTACAATTCTTCCGCCTCCCCTTCCCTTGCACTCTCCAATTACAGAGCTGCCTCTCCTTCTCCTCTCCCTCACCCTTACTATCCTC CTCCTGCGCATAGGCTTCATCCTTCTCTCCCCAACAACCCTCACTATCTCCAGTCTCCTCCTCCTCCTCCAGCTTCCGCTCCGATTATCGGCGTCCCCGT CGTTCCCCAGCTCAAGGTTGCTTCATCTCCTGCTCCAGTTTCTGATTCTAATGGCTACAAACGTACAAGGGACACACCAGATGATCCTGTCCTTCTGATT AGAGGTCGTAAAGTAGTGGTACAAGAGGGTGCTTCGATTTATGCACTTTGCCGGTCATGGTTGAGAAATGGCCTTCCGGAGAAACGTCAGATTTCCCATG GTGAAGGTGTAAGTACTCTCCCAAGACCCTTGCCTTTACCTGTGGTGGACAGTAATTCGCCGAGTAATAAAGAAGCCGAAGAAGAAGATAGCAAAGAGGC TGAGGAATCTGTTGAAAATTTATCTGCGCAAGACTTGTTGAAGAGACACGTTAAGCATGCGAAAAAGGTTCGAGCCAGATTAAAGAAAGAACGGTTGAAT CGAATTGAACGATACAAAACTAGGCTGGCGCTTCTTCTTCCTCCGCAGGTGGAGCAATTAAGGAATGACAACGCTGCTGGGCACTGA
AA sequence Show only first row Show all	>Lus10003918 pacid=23166335 polypeptide=Lus10003918 locus=Lus10003918.g ID=Lus10003918.BGIv1.0 annot-version=v1.0 MASPTPTNTNAATATARPAAGRPQLSHPSPYPIYHQQVQQQQHYLNTTSNNNSIRSQTLIPTSNTPQPPPGGILYPVASSGRGFIPPPVPPPPTTRPSSS DYSRSYNSSASPSLALSNYRAASPSPLPHPYYPPPAHRLHPSLPNNPHYLQSPPPPPASAPIIGVPVVPQLKVASSPAPVSDSNGYKRTRDTPDDPVLLI RGRKVVVQEGASIYALCRSWLRNGLPEKRQISHGEGVSTLPRPLPLPVVDSNSPSNKEAEEEDSKEAEESVENLSAQDLLKRHVKHAKKVRARLKKERLN RIERYKTRLALLLPPQVEQLRNDNAAGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	2.0	0.9320
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	5.5	0.9066
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	5.7	0.9097
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	6.0	0.9018
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	8.5	0.8826
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	11.0	0.8801
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	11.4	0.8773
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	12.2	0.8979
AT1G19990			unknown protein		Lus10033141 [exp]	15.9	0.8909
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	16.2	0.8939

Compare expression of checked genes

Lus10003918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.