Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44380 157 / 6e-48 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 151 / 2e-45 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 146 / 2e-43 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 145 / 3e-43 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 137 / 2e-40 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 136 / 1e-39 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44390 125 / 5e-36 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 72 / 3e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G27660 71 / 3e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G46670 61 / 8e-11 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037470 [exp] 334 / 2e-113 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 58 / 9e-10 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 54 / 2e-08 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 50 / 3e-07 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 43 / 0.0001 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229900 [exp] 214 / 6e-70 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 85 / 2e-19 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 77 / 2e-16 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057900 [exp] 76 / 5e-16 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 71 / 3e-14 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 57 / 1e-09 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G140133 [exp] 55 / 1e-09 AT4G01930 68 / 9e-14 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 57 / 3e-09 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 56 / 3e-09 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 56 / 4e-09 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF03107 [flax] [poplar] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Lus10003919 pacid=23166332 polypeptide=Lus10003919 locus=Lus10003919.g ID=Lus10003919.BGIv1.0 annot-version=v1.0 ATGGCAGCAACAGTAGCAACGGCATCGAGAACAAGCACCGTCAGGTTCCAAACGATGCGCAGACGACCTTGCGTTAAGCATTTCAGCCATTCCCACCCGC TTCGTCCCATCGACGTAAGAGAAGAGGAAGAGCTTATATGCTCCGGCTGCGAGCTGGATCTCTCCGGTTCGGCCTACACTTGTAGCAAGTCAACCTGCGA GTTCTTCCTCCACGGAACGTGCTTCGACCTCCCCAAGCGCCTTCAGTTCCCTCCCGATCACGTCTCTCGCCATCAGCATCCCCTCGTCCTCCTCCCTTCC CCTCCCGGCGGCGGCGATGGAGAGTACGCGAAATTCGTGTGTAATGCTTGTGGTGACTACGGCACTGGCTTCACCTATACCTCGGAATCTTCTGAGGAGT CGTTCAATCTCCATGTGACGTGCGCTTTCCTCCCCGACGTAATCAAGCATGTCGACCACGAGCACCCGCTCCGTCTCTTTGTTCCTTCCACTTCCCTAGA GAAAGGAGCGATCAGCTCTTCGAACTCGAACTCGGTCTTCACCTGTGACGTGTGCAGGAAGCATGTTCCGGAAAACTGCTGGATCTACTATTGCCTCGAA TGCGACTATGGCACCGACCTCGCTTGCACGTCCACCGTGTAA
AA sequence Show only first row Show all	>Lus10003919 pacid=23166332 polypeptide=Lus10003919 locus=Lus10003919.g ID=Lus10003919.BGIv1.0 annot-version=v1.0 MAATVATASRTSTVRFQTMRRRPCVKHFSHSHPLRPIDVREEEELICSGCELDLSGSAYTCSKSTCEFFLHGTCFDLPKRLQFPPDHVSRHQHPLVLLPS PPGGGDGEYAKFVCNACGDYGTGFTYTSESSEESFNLHVTCAFLPDVIKHVDHEHPLRLFVPSTSLEKGAISSSNSNSVFTCDVCRKHVPENCWIYYCLE CDYGTDLACTSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	0	1
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	1.7	0.9795
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	3.2	0.9639
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	3.7	0.9790
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	4.0	0.9729
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	4.2	0.9731
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029644 [exp]	5.4	0.9490
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	5.5	0.9721
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	6.5	0.9653
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	10.6	0.9600
AT3G61920			unknown protein		Lus10023060 [exp]	10.8	0.9622

Compare expression of checked genes

Lus10003919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.