Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05577 148 / 4e-41 Domain of unknown function (DUF966) (.1) AT5G59790 94 / 4e-21 Domain of unknown function (DUF966) (.1) AT3G46110 92 / 8e-21 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 91 / 1e-19 Domain of unknown function (DUF966) (.1) AT5G10150 89 / 1e-19 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037468 [exp] 468 / 7e-165 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 93 / 1e-20 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 92 / 2e-20 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 92 / 3e-20 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 92 / 4e-20 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 91 / 5e-20 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 91 / 7e-20 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 75 / 4e-15 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 74 / 1e-14 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024900 [exp] 162 / 5e-46 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 159 / 9e-45 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 94 / 4e-21 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 91 / 5e-20 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 91 / 7e-20 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 89 / 3e-19 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 85 / 5e-19 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 87 / 1e-18 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 84 / 3e-18 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10003921 pacid=23166324 polypeptide=Lus10003921 locus=Lus10003921.g ID=Lus10003921.BGIv1.0 annot-version=v1.0 ATGGAGGTTGCGACGTCGTTTAGCAACGGCGCGATGGTGGGTTCAAACGGCGGCGGCTGCGGCGGTGGAGGAGGAGAGTTCCGGCGGCTTCACATCGTTT ACTTCCTGACTCATATGGGCCGCATCGAGCATCCCCACCTCATCCGCGTCCGTCATCTTAATCGGAACGGCGGCATTTTCTTGCGTGACGTGAAGAGATG GATGGGAGATTTGCGCGGGAAAGACCTGCCGGATTCCTTCTCTTGGTCTTACAAGAGGAGGTACAAAGCCGATTATATTTGGCAAGATTTGATCGATGAC GATCTAATCACTCCAATTTCTGACAACGAATATATCCTCAAGGGATCAAAAATCACGACAGATAATGCGGCTACAGTCACGGTCCCTCTTAAAGAGACCG CGACTAGCGGTCCCTCCTCCTCTTCATCCTCGTCCACCACATTCGAGATGGTACCGGGCTCCAACGCGCAAAGTGATGTCGTTTCGAAGGATCAGGAACA GGGCAACCATCACCAGTTAGAGCCGTTTTCAGTAGGGACGAAACATTATTCAAATCAAAGCTACTCATCCAACGGATCCTCCACTTCATCATCAAGTCCG ATCGTGGATCGTCCGTTGACGACGTCTCCTATCGTCGTCGACAAGGCCACTGTAATCGGCAGCGGCGGGGATGGTCGGGATTCTCCGACAATATCGCCTT ACTACACTTACAAATTCGATCAGAGGAACAAATCCGAGGAATATTCATCGTCGTCGCCGACGACTGGTCGTCGCTCGCAATCCCCTGCCATGAAATCAAG AAGGAGGTGGAGGCAGAGGTATTATTCCAATGCAGCGAGTTCCAGAGTAACGCTCCGTAGGCTGATGGTTTGCGGTGGTGCTCCTGCTGATACGGCCGTG GTCGACGCCGTGCTGGTTGCCGTGAACAAGTCAACGTCGACTGTGCGGAGTAATGTTACTGTGAATACGCAGTCCACGTCAGCAGCGAAAAACAGGGTTA TGGTCGGGAGTGCTCATGAATTGCAGCTTAAGCTACACCGTGATCAACAGCATCAAAGTGGTCGCCGCCGGTAA
AA sequence Show only first row Show all	>Lus10003921 pacid=23166324 polypeptide=Lus10003921 locus=Lus10003921.g ID=Lus10003921.BGIv1.0 annot-version=v1.0 MEVATSFSNGAMVGSNGGGCGGGGGEFRRLHIVYFLTHMGRIEHPHLIRVRHLNRNGGIFLRDVKRWMGDLRGKDLPDSFSWSYKRRYKADYIWQDLIDD DLITPISDNEYILKGSKITTDNAATVTVPLKETATSGPSSSSSSSTTFEMVPGSNAQSDVVSKDQEQGNHHQLEPFSVGTKHYSNQSYSSNGSSTSSSSP IVDRPLTTSPIVVDKATVIGSGGDGRDSPTISPYYTYKFDQRNKSEEYSSSSPTTGRRSQSPAMKSRRRWRQRYYSNAASSRVTLRRLMVCGGAPADTAV VDAVLVAVNKSTSTVRSNVTVNTQSTSAAKNRVMVGSAHELQLKLHRDQQHQSGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05577			Domain of unknown function (DU...		Lus10003921 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	27.1	0.8823
					Lus10002693 [exp]	27.1	0.8822
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	33.0	0.8797
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10010630 [exp]	33.7	0.8354
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	36.9	0.8776
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	49.3	0.8721
AT3G19990			unknown protein		Lus10038848 [exp]	52.8	0.8733
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	56.8	0.8719
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	67.1	0.8711
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	73.9	0.8697

Compare expression of checked genes

Lus10003921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.