Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26010 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G49990 53 / 2e-07 F-box family protein (.1) AT1G15680 51 / 1e-06 F-box family protein (.1) AT3G20620 47 / 1e-05 F-box family protein-related (.1) AT3G17540 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G10430 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G17280 42 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT3G08750 42 / 0.0006 F-box and associated interaction domains-containing protein (.1) AT3G24700 41 / 0.0008 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037467 [exp] 870 / 0 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036954 [exp] 370 / 1e-126 ND 48 / 5e-06 Lus10003923 [exp] 310 / 2e-103 ND 40 / 0.002 Lus10000860 [exp] 285 / 3e-92 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10028682 [exp] 285 / 4e-92 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10037105 [exp] 218 / 2e-69 ND 44 / 1e-05 Lus10019151 [exp] 118 / 4e-30 ND / Lus10036951 [exp] 103 / 1e-25 ND 44 / 2e-05 Lus10014682 [exp] 84 / 2e-18 ND 37 / 0.006
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 91 / 1e-19 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 66 / 2e-11 AT3G15910 58 / 5e-09 unknown protein Potri.008G038000 [exp] 58 / 5e-09 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.017G058900 [exp] 53 / 2e-07 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G462650 [exp] 53 / 2e-07 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.008G215800 [exp] 52 / 4e-07 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 52 / 5e-07 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 50 / 1e-06 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 50 / 2e-06 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.019G013900 [exp] 49 / 3e-06 AT5G03970 397 / 2e-136 F-box associated ubiquitination effector family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10003922 pacid=23166320 polypeptide=Lus10003922 locus=Lus10003922.g ID=Lus10003922.BGIv1.0 annot-version=v1.0 ATGGCTTTGGCGGAATCACCTGCATTATGCATCAATGATGTTCTGACTCCTCATGTACTGACGGAAGTGTTGAGTCGCGTTCCTTGGCTCGATTTGCTTC GGTGTAAGACTGTCTGCAAGCTTTGGCTCTCTTGTATTGATGATAATCCTGCTTTTGTCGCTGGATTTGTTCTCCAGAGGGCTAGAGAACTGGAAGATAA GCGGCTGATCCGTGGCCAATGGAGTGCCAGACAAATTTTCACGTTAAATCCCACCTATTATTGTTCTGATCCTTCCAAATTCTCCTTAGATTTCCTCCCC ATACTGGAAGGCTTGAATCTTCGGTACAACAGCTTGTTCCATATAGTATTGGGATCTGCAAATGGCTTGCTCTTGTGCACCCGCAACATAGTCTACGGTG AGAGATACTGCATTTGCAACCCGATCACTAAGAAATGGCTCGATCTTCCACCGTTCCCTCCTTGTGAAAACAATATGGATGTTAAAGTTGGTTTCGTCTC TGATCCATTCTACAATTTGAATGAGGATGATGGTTCGGTCGTTGTGAATAGTCGATTCGGATTCAAGGTGGTCCGTCTGGTCGCCACTCGTTATAATAAG GATGAGGATATTTGCAATGTAGATGTGGAGGTGTTCTCGTCGCAAACAGGATGCTGGACTACTACTTATCGAGTACCGTTGCCGGACCATATCAATTGTA TGCTCGAAATTCTTTGTGGTGGTCCCATGGTTGCCTATAATGGGAAGCTTTATTGGATTGTGGAAGATTGGGATGATTTTTTAGTCTATGATACCAACAA GGGTGAGTTTCTCATGGATCGCCTCGATCCGCCTTCAAATCGATTGCGATGGTGTAATGAAAACACAATGTTATACAACGGGCTTAGCCTATGTCAAGGC TCGTTATGGGTAGCGCAAGCACAGGATACACGAGTAAGAGTATTTGTACTCGCAGATGGCCAGTGGTGTCTCGAGCACGATGTTGATGTCCTTGTTGATA TGGAATGGGGTTGGACAGAAGAGGAGCAGTGTTGGTCATTGTCAGACTTTTCGGGCTTGACATTCCGGTCTATGCATCCCAGTGATCCCATGGTCGGGTA CCTGTCCACCGATGACACGTTGCTAGAGTGCAATTTCGGAAGCAGAACCGTGAGAGTGCTAATCTACATCGACAAAGACTCATTCCCATATGACGAATAC TTCTACGTGCTGTCTATTCATCTCCCACTTTGGCCCACCCCACTGCCGTCGATTCAAAATGCTTGA
AA sequence Show only first row Show all	>Lus10003922 pacid=23166320 polypeptide=Lus10003922 locus=Lus10003922.g ID=Lus10003922.BGIv1.0 annot-version=v1.0 MALAESPALCINDVLTPHVLTEVLSRVPWLDLLRCKTVCKLWLSCIDDNPAFVAGFVLQRARELEDKRLIRGQWSARQIFTLNPTYYCSDPSKFSLDFLP ILEGLNLRYNSLFHIVLGSANGLLLCTRNIVYGERYCICNPITKKWLDLPPFPPCENNMDVKVGFVSDPFYNLNEDDGSVVVNSRFGFKVVRLVATRYNK DEDICNVDVEVFSSQTGCWTTTYRVPLPDHINCMLEILCGGPMVAYNGKLYWIVEDWDDFLVYDTNKGEFLMDRLDPPSNRLRWCNENTMLYNGLSLCQG SLWVAQAQDTRVRVFVLADGQWCLEHDVDVLVDMEWGWTEEEQCWSLSDFSGLTFRSMHPSDPMVGYLSTDDTLLECNFGSRTVRVLIYIDKDSFPYDEY FYVLSIHLPLWPTPLPSIQNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003922 [exp]	0	1
AT3G26010			Galactose oxidase/kelch repeat...		Lus10037467 [exp]	2.8	0.8472
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	3.5	0.8787
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	8.4	0.8417
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	8.9	0.8711
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	13.3	0.8413
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	15.5	0.8556
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	16.9	0.8567
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	17.5	0.8455
AT1G76660			unknown protein		Lus10016050 [exp]	18.0	0.8392
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	20.2	0.8514

Compare expression of checked genes

Lus10003922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.